Gene detail

Detailed information of gene18087.t1 in Actinoscyphia liui

Genomic Location: chr5:11625326...11631092
NR annotation: XP_028519508.1, uncharacterized protein LOC110254088 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene18087.t1

ATGTCGAGTTTTAGCATCATAGACGCGGATGGTGATCTCATTAATGGCCACAATCTTAGGGAACTTATAAATCACATTAGTGATGATTTAGCATGGAGTTCAAGATTAACAATTATTCGCGAATGTGTCAGTGCTATCAATTACTTGCATGATCACAATATCATCCACAGAGACATAAAATCTGCCAACATCTTGATCGATGGACACAATTGTGATGAATTTCATGTAAAGATTGGAGATTTCGGGGAATCGAGACAGCGTCTTGAGGTGACTACGCTCTCTACTGTAGGCGGCAGGAATGGTCCGGTAGGGACGCTTCAATACATGCCCCCAGAAGCAATGAAAGGATTCAAGACAAGCTACAAACATGATGTCTATGGATTTTCCATGATCATGTTTGAGCTTCCTGTACCATCTCGGGACAGTCCCTGGGATACAGAGGCAGACCATGACGAAGCCATCAGAGCTTTGGTATTGAGTGGAAAGAGACCTTCCTTCCCAAGTGAAATCCCTCCCGATTGCCCTGAATGGTTTGTCCCCCTCATGAAGGAATGCTGGCAACAAAACAAAGATCTAAGACCGCATTTCTCTGAAATTGCAAGAAAAGTGCTGCCGCAAAAACAGAGAGAGAACGTAATAAACATATGCCTTAAAGTTCATCAAGGCAGCGCAATTGATGAAATCGGAGCTATATCTGCTCAAAAAATATCTCTTGGGCTAGAGGTGAATAAAGAAGAAGTGAATTCTAACGTTTTGCAAAGAGACGGTACGAATGGTTGTTCTTTTTTTACCATGTTGGTCATAGACCACATGTTGTCCAATCCAGAGCTCATGACGGAGAGTTACATATTTGAAGGGGGCTTTGCAACAAAAATGGAGGAAATTATTACGGAAAGTCCACAAAATTTGAACACTTTTCGTAAAACTGATATCCAATATTCCCCCGATGTAGCACTTGACATGTTGTGCGAATCTGATTTCATCAAAACATCCTACGACAAGTATGAGCTGATTGTGGACGGTGATACTGATGCTCTTTTAAGAGGCGTCACAAGTTTGCTTGATCTGACAGATACGTCCCCCTGCAAGATAAAATGCGCTGCCTACGTTGTTCCGCCGTACACACTAACCATAGCAGGCATGAGATTTAAAGATGGAAAGCACTTGGGTTTAATTGTAGATACCCACAGCATTGCACATGAGCTAGGTGGCAATAAGAATGGCCTTATTAAGTGTTTTGAAATAAGTGATGGATGTGTTGGCGAAGTTGGAAAGCAAATGGTTGCTTGGCTAGTGCACAGACTCGGAATGTCTGGTGATAGTCCCGAAGAACAGAGCCTACTTCAAATCAAGCCAAAGTTAGAAACAGATGGAAACACTAATACTATGGAAATGATGGACAACATAGACTGGGACAGCATAAATGACATTGAATGTATGCAAGGTGATACTCTTCACGGCATTGCTGACAATAGTAACCACCCTCAAACGTCTAAATGTGACTGGAACGCCGACAACTACCACTATCCCACTTCTGGCTTAAGTCCTCAAGATCGAAGAATGCTTATAAATGGATATGGGTCACAACTTGGTATAATGTCATTGAAGGACTTCCAGTTCCAAGCCATAGAAGCTTTTACTAACAAAAAGGATACTGTGATTATACAATCTACATCAAGTGGGAAAAGTGCGTGCTTCCAGGTTCCTGCCATTATGTCACCAAGTGGGCAATTTGTACTGGTCATTAGTCCAACAATCTCACTAATGGAATCTCAAGTTCATGCCATGCGTCAAAAAGACATCGATGCTATTTATCTAGGATCTTCCTCGACAGACCACTTTGATTTAGAAACGTTATCTGAAGGTGGCTATTCTGACGAAAACGTGCCCAAGCTTATCTATGTAACGCCCGAATACCTAATGGGAGATTGTACGAAAGGAAGAGAAGGCGTGTATGAAACGCTATTTGGCTGTCCTGAAAGATTGGCCCTGATAGTATTGGACGAATGTCACAAGATATTTGAGCGGTCTGGAGAATTCAGGAAATGCTATGAAGAGCTTCACATTCTGCGAGATGTATTCCCAAGCACTCCAATCATGGCAGTTACAGCAACCTTACAGCCCAAGTACGTTGAGAAGCTATGCAATAACTACCTACGGCAGCCAGTTGTTATAAGATCCACCGTTAACAAGGCAAATATGCAGATTGTTCTGGAAAGATATGGAACCAATGTAAAATCGAAAACAAAGACGGGAAGTTCAGCTCAACAAGGAATTGACATGTGGACTGAAGTAGCCAAAACCATCAAGGACAGTGCAGGAGAAAATGCAACCATAATATACACGGACTTTGTATCTAACGTCCAGCAGCTTCAGCAGTGCTTTGAGCAAAAATTCAACATTGCTGCTAAAACGTACACCGGGAAGGGTATGGAAGCCGAACAGAAGAGCAAGGTTGTTAAAAGCTTCAGGAATAGAGAGTTTAACTACCTGATCGCCACAGAAGCCTATGAAGTTGGTGTCCACAACGATCATGTCAAAAACGTTTTTAGGGTGGGTGCACCAAGAAATCTAACTGTTTTGCTACAAGAATTTGGCAGAGCTGGTAGAGGTGGAAGTATTGCTCAATGTTATCTTTACTACAATGAATTTAAAGACGATCAGAGACTTAACCGTTGGCTAATTGGTGCGAGTGATATCGAAAAGGAGAGTATTTTAGAAGACTATGAGAAAACTTGGAGATTTATCTATTCGCCACTTGCGGGAAAATGCATAAGGGAAACGCTGATGGACTACTTTGGTGATGATAAAGAGGCTGTTGAGATATCTGACAGTGGCCAGTGTTGCGTAAGCTGCAAAGTAAAAAAAGAACATCCTTTCTATGACGCCAAGGAAGATATAATCCTTATACTTAATGCTGTAGAAGAACTGCATCCTTCAGATAGAAGTGAAAGAAAGATTATCTCATGGTTAAGAGGGACGAGAGAGAAGTGGGTAAAAACAGAGATGTACAACTGCAAGATCAAATCGTCGACAACATATTCCAGGGCAAGTAAGAGCCACAAGGAAAGTCTGGTTATCCTCCTCGAACAATAA

Transcript

gene18087.t1

Protein

Uniprot

Uniprot term	Description
P54132	RecQ-like DNA helicase BLM OS=Homo sapiens OX=9606 GN=BLM PE=1 SV=1
Q9I920	RecQ-like DNA helicase BLM OS=Gallus gallus OX=9031 GN=BLM PE=1 SV=2
O88700	RecQ-like DNA helicase BLM OS=Mus musculus OX=10090 GN=Blm PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR004589	Family	DNA helicase, ATP-dependent, RecQ type	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006268	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0009378	Molecular Function	four-way junction helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan