Gene detail

Detailed information of gene18270.t2 in Actinoscyphia liui

Genomic Location: chr5:15045278...15058980
NR annotation: XP_031563030.1, rho GTPase-activating protein 19-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene18270.t2

AATATGAGTAAGAAAGATGCTAGAGATCCTTACGCAGCTATCTGCATAAGCCGATTGACCAGACTTGTCGATTTGGATATCCTTGAAGACATCCAAGAGCTGGAAGATGCGGGCAATGTCATGAAAAATCTGGAGCTTGAAAACCAAGCAAAATCCAATCGCAGTTTTTTGGCTAAATCTACCGAAAAACTCAATAGGATTATCAACCGAAAACATCACCATCACCAGCATCCTAAGATATTTGGTCATCCCCTCACAGATGAAGCTGTTCTTAGAATTGTTCCTATCATCGACCATCTAAAGTCTTGTGTTGATGTGGAAGGTATATTCCGTGTCCCTGGAAGTAAAAAGCGACAGGAAGAGCTAAAAGAACTCATAGATAAAGATGATCAAGTCAAGCTAAGCAAAGGAAAATTCACTCCTCATGACATAGCAAGTGTGTTGAAACAGTTTTTAGCTGAATTACCTGAACCTCTATTAACTCATGCCTCACATGAAGCATACATACAAGTGACAGAGATAAACAACGACCATGACAATTCAAAGCACATAGAAGCATTACAGATACTCTTTCTGATGATTCCCCCAGGGAACAGAACACTTCTGTACTACCTGCTAGACTTATTACACATGATTAGCAACAGCCATGAAAGCAAGATGACTCCACATAACTTGGCTGTGGTCTTCTCTCCCACCATTCTTTACACCAAGAAGACGAAGATGTCATGTTTAAGTCAATTCCCTGAAGATCTTGATGCGATGAATCAGACTGTTGCATTTATGGTCACACATGGAAAAGAGCTGTTCAAGATTCCAGACATTTTAAAGAAAGAAATCAATGCATCAAAGAGTAATAATAGCATGGGAATGGATGAAGACATTCCCAGTATGTCACACACATTTTGTCAACCGATGAACTACAAGAAACACAGGCAGGTAGTGCAAGAAACTACCTCAGAAGCATTAGTGAGTTTGTACAACCATGTCATGGATATGCCAGATGGTCCTGTCAAGCAGAAATTCATGGAAAAGTTTGAAAAGTCACACCCTGGTACTCCTCCATTTATGCCTAAATCAAGGTGCAAGGCCAGCCATCTAACATCATCAACTCCACTGTCAACATGTTCTCCAGCATCACTAGCTCGTTACCCTCTGTCACCCATCAACATGGACCTCACAAATACATCCACATGCAAAAAGGTTGCCTTCAAATCACCACAACCACCTTCCTCTACCTCTACTAAAATGGGTTTCCATAGATTCTCTCCTTACATCCAAGACATGAAAACTCCCTCAGGCCTCATTTCACCGTACAAGACACCTCAAACTCGTGGCTCTAAGGCTAGACATAGGCGTACTAGTACAACTGGTAGTCTGGGAATCTCTCCTTTTCGCCGGAAGAGGACCAAGACGGGAAACACCCCAGACCCCATGGCCACACCCTCTGGACGGATACATATGGCAAGCCGACAGACATTTGATAGCCCAAGTGAAGCAGTCGTAACACTTTATGGGACTCCAACCATTAGGAAGAGAATAACGAGCAAAGACTACATGGGAGACCATACATGTACATAAGGCTAACACCGTTTACAAATAGAGTAGAAACATTAAATCTGTAGTGCAACATTGATAGTATTATAATAATAGTACTAAATAGTGATATTTTTATTGTTTTGTATTTCATCATTACTGCTATTTAGTACTAATAAGTGCAAAACATTGCACAGTTTTAGTGTTTGTACTCTAACAGGACCAAGCAAAGAAAGTTAGCCTATATAATTATGTGATGTACATGCAATTAAGTAAATTTCCCTCAGGTTCAAAAATTATTTAGGTGGGTTTAACTGTTGTAAAATATTGATGATTATATATAATTATTTAGTTTAATTTTATTTTATTGGATAAAATGTATACCTGGTATTCTATATTATTTGTTTACACATTGTACATAAAAAACATGAACTTTTACAAAAAAGATAATAAAATGGAGCAACC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6INE5	Rho GTPase-activating protein 19 OS=Xenopus laevis OX=8355 GN=arhgap19 PE=2 SV=1
Q8BRH3	Rho GTPase-activating protein 19 OS=Mus musculus OX=10090 GN=Arhgap19 PE=1 SV=2
Q5F3G0	Rho GTPase-activating protein 19 OS=Gallus gallus OX=9031 GN=ARHGAP19 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008329 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14963 all species →	RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0051056 all species →	Biological Process	regulation of small GTPase mediated signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20640	ARHGAP19; Rho GTPase-activating protein 19	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.