Gene detail

Detailed information of gene18442.t2 in Actinoscyphia liui

Genomic Location: chr5:18616346...18644104
NR annotation: XP_020899284.1, pentatricopeptide repeat domain-containing protein 3, mitochondrial [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene18442.t2

ATGGCGGCGATGAGCGCTGCTGGAAGATTGTCGCGAAAACTTGGTTGCGTTCGCCTGTCGTATTCAGCTTTAAGATATGCTGCCACACAATCTGGTTTATCAGAGAAACAATCAGATGAAGGACAATCAGCTGCAGGTTCTCAAACAATCAATGACCAGTCAATAAAAAGAGACCATTTAACTGTACTTAAAGCACTAGCTCGCACAGTACAGCCATCTCCTCTAGCACCCCCTAGAGAATTGTATGAAGATTTATTTTTGTATCCAATGTCAACCAGAAAAAGGGAAGAGTGCAAAGCTGCTCGCATCTCTGGTTTTGAAGCAGCAGAATTTGTTTTACAAAAATATCCAAAGTTGTTTCCCATGAGAAAACCTGAACCAGCCTGGGAGCAAATTACTGAAAGCAACTCCATGCAAAGTGAGGCTGACCTAAAAATTGTTATTTCAAAGATGCAACCACAAGATGCAATCAGTGGTTATCAAAAACTGTTAAATGATGGAATCACAATTTCACTTGAAACCAAGAATGAGCTGTTAGACCTTGTTGGTTATCTTGGTACTGTCGCAATGCACAATGTGGAAAATGATCTTGACACAGAAATGGAAACATCTTCAAGTGAATCATCAGATGATGTTGAAAGTTCAGAGTCATCGGATGAAGAGGAGGAAAATGTGAGACACAAAAGAACATGGAGAATGGATAATTATGCTGAAAAATTGTTTAAAAGTATGAAAGAGAAAAATTCAAGAACATATGATGCTATGATATTGGCTTTGAATAAGCATAATTATTCAGAAAGAGCATTTGAACTATTTAAAGAAATGAGAGAAGGCAATTATCAAGCATCTATGTTTACATATAATGTGTTACTGCAAAAGACTCCAATGTATTATGGACATGGAGAAAAATTATGGCATGGTATTCAGGAATTAATTGGACACATGAAGAAGGATCCAGCTGTTGTCCCAACACTTGCTACATATAATGCTATTCTAAAGTTGTGTGTACTGATACCTGAGGGATCTGACAAAGCTTTGGAAGTATACAGAGACATGACTAATAAAGGGATTGAACCATCATTAGCATCATTCAGTCTTCTTCTGAGGTCAAAGTATTACCGACAGCTTTATTCTCAACAAAATAAAGCTGGGGATTCAAAGTCGTGGCTGGTACCTAGTAATAGTCTTTTACAGACAGTGATTGGTCATTTAGAGACATATGACACATTGCCAAGTTTACAACATCTCTCAGATGTGAGGTTCTTCAATACAGCTATAGGTGCAGCAATGTACAGCCAAGACCCCAATGCAGCCCATAGACTGTATGCTTTAGCAGAAACCAATGATACCACATTGTTGGGTGGAAAAAGAGGACAGTTTTATGGAACATTTCTAGTGACTCTAGCCAGGTCTGAGAAAAGTGCAGAGGTGGTTTATCACATGTACAAACAACTTGTACCGTCTAAACTCGTTCCACATAACTGGGTGTACAGTGAACTGTTAAAGATGGTTGAACGAGAAAAAATGCCCAGACTTGTCCCTCAATTTTATCAAGACATGAAGCGGTTTCGTGTACCAGTAAGTGAGTCAACGTGTCGAGGAATCTTCTCAGGGTTAGCCAGGAGAACGTCTCCTAAGAATCACAAACAATACGTAGAGATTATGGAAGATGTCTTCTTTTGGATGAACAAATTTAACATACCAGTTTCTCCACATATGATAACCCAACTAGTTAGACAGTACTGTGCTGGTGGGCATTTGAGACAAGCCTGGAAAGTGATGAAAATGTTTGATGAACATAATTGCCACCCAACTTACACGTCGTTGACACAGCTGCTGGACTGCTGCAGTATGAACAGAGCTGAGGACGAAGCAGTGAAAGTGTTTGAGTTAATGGCTAAGTACGGATACGTGATTCCTAAGAGGAGAAGAAGTAACTTCTATGACAACATTCATATGATACTGTCCAAAAGATTGTACATAAACAGTTTATTTGACAACATTGAGGAACTTGACAAGCAAAGAGCAAAGTTTAGTTCAGGCCGCAAAGAACGAACGACATTAAAGGACGAAGAACGCGTTAGAAGCTAG

Transcript

gene18442.t2

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004283 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13812 all species →	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan
PF13041 all species →	PPR_2	PPR repeat family	Repeat	Interproscan
PF01535 all species →	PPR	PPR repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR037387 all species →	Family	Pentatricopeptide repeat domain-containing protein 3	Interproscan
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16276 all species →	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan
GO:0043024 all species →	Molecular Function	ribosomal small subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17659	PTCD3; pentatricopeptide repeat domain-containing protein 3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.