Gene detail

Detailed information of gene18489.t1 in Actinoscyphia liui

Genomic Location: chr5:19258468...19263193
NR annotation: XP_020899291.1, dual specificity protein phosphatase 1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene18489.t1

GTGAAAGCCGGCGCGATAGCTAGATGAAGACCACTGTTTCGTAATTACTTTATATTTTTATTCATCACAGACTAGACAAGGAGAACCGAAGAGCTGCAAACTTTGTGATCAATATGGTGGCTATGGATTCTTGTGTTGATTTTGTGATCCCCATTTTACCACTGACCGCAATCAACATGGTTCGATCTCAACCAACACAGTGCATATTTGTGGACTGCCGATCATTTCTGGCATATAACGTGGCTCACATCAGAGACTCGCTCAACATACACTGTCCACCTATAGTTAGACGGAGATTACAGAGGGGTAGCGCGACTCTATCCACTCTACTTACATGCCCGCAGTCAAGAACTACGGTAGACGAGGCCGAAACTTTGATTTACTACGATGATGGCACGTACAATGAACTGGAGAAAGATATGACTATACAAATAGTGGCTTCACTACTCCAAAGAGAGGGCAAGAGTTACCAACACTTCGTACTCAAAGGAGGATTTCAACGCTTTTCCGCGCTCTACCCATCCATGTGTGAATTCGTCAAACCCCAACATCATTGCTCGGCACAGACTAGTCCGCTAGCGTTAAAGCTACGAAGTGGAGATGCTATTAAGACTTGTAGTCCAAGGGAAAGGGAATGGAGAAGTGAAAAACAATGTCATATAGAAGATAGTGATCCTGTTGACATTCTCCCGTACTTGTACTTGGGCTGCGAGGTGCACGCTTCAAGGAAGGAGTTACTCCAACGCCTCGGCATCACCTCGATCATCAACGTATCTAGAAATATCCCAAACTCTTTTCAAAACGACTTCGAATACAAGAATATTCCCGTAGATGACACATATAATGCTGATATTGAGTGCTGGTTTGAAGAAGCTGTTCACTTTATTGATAACGTCAAGAACTCCGGAGGACGAGTGTTGGTACATTGTCAGGCAGGTATTTCAAGATCAGCGACCATTTGTCTGGCGTACCTCATCAGTACACTACGATTTCGACTTGACGAAGCGTATGAGTTTGTCAAAAAGCGGAGGTCGATAATCTCGCCGAACTTCAATTTCATGGGACAATTGTTAAACTGGGAAACTTTGAACCAATCGTCTTGTCGACCCGAGGAGATCAAGACGCCTAGTTGTAGTAATTATGGTTTTTTTAACTTCTCATCTCTGCCTTGTGGAAAAGAGTTGGTACCAAGTCACTCCCCTGGGCTCGTTACGACTCCCATATAGCCCTGTATAAACCTCTTCGAGCATTAGTGGAAATTTGTAACTTTTCTTCTCGTAAATATTTAATTGCAATGACTACAGCTTGAAGGCGCTGACCTAATTTCTCTCCATTCGCTATTGATACACAGTTTTCTATTTTTTAAATTCAAAATCTGTTCATGAAGGAATCCAGACATTTTGTGTACATATTGTTAACTCGTCTCTGGTTGCCGGTGATAAAGCCACAAAGCTTTAATGATAATACCTACATTTTATAATGATCGTATACATAAGATTTATTCCAAAATTATAATAGAACCTTTAAAATTGACAGCAAAGAAATATTTGTGAAAAACCATACTTGTATATTTGTAAATATGAACAATTATTAAAAATTAGGAGTATACACTCCTATCGAAGTTTTATCAAGAAAAAATGTTGCTAAAAATAAAAGATTTGTATTTTCTCCAAACAACTATGAGTTATGGTGTTTTGACGTAATAAAGAACAGTTTGTGCGAGGGAGGGGTAGAGTACAAACAGTATAACATAAAACACTGCTAGCTCATGCTATAGAGTACAGTGTCTATTGTTTTCTATTGTTTCATCAATGTTATTTTGTACTAAGTACTGCTAATTCTTTCGTACTTTTTCACGGGTATATTGTTTACACTATAAAGGCCCAAGCAAACGGGCCCAACATTGTTGGCTCCAACATGTTCTGGACGTTTAAATACCCTGCAAACATTCAAGCTAACAAGTTCCAATATTTCCTTTTTTTCTTGATGGGTCCGTTGGGATAGCGAACGCGCGCTATTTGTCGTATGCGCCAACACTACCCAATAACTGCCAACAATGTTGGGTGTTGTTGGTTGACCCGTTTGCTTGGGCCTTAAAAAGTAAATATAATATAAGAACAAAGGCAGAAAGCTTTCAAGTGTTCAAATAATTATCCAGATGTTAATTTGCGCGAAACAAGTATTAAATAGCTGTATTATTATTCATAAGGCCTATGATACTGGGTGTAAAGTGACTCCCCTGCAGTAGAGTGATGTTCATAAACCCGTGAAATAGATGTTAGTGTATTTAGCAATATTTCACTCTAATTCTTTTGTTTTCTATTGTAATAATCTGACTATTACATTCTAATAAATACACTTTGTTTCACGGGTTAGAGTGGTTTACATTAGAGTGGTTTTCATAAATCCGTGAAACAAAGTGTATTAGTTAGAGTGTAATAGTCAAATGACAACAAAAGAACACAATGGAATTTGGGTGTATTAGTACTAAATACACCAAAGTGTATTTCACGGGTTTATGAAAATCGCTTTAACCCGTGAAACAAAGTGTATTTATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28562	Dual specificity protein phosphatase 1 OS=Homo sapiens OX=9606 GN=DUSP1 PE=1 SV=3
Q64623	Dual specificity protein phosphatase 1 OS=Rattus norvegicus OX=10116 GN=Dusp1 PE=1 SV=1
P28563	Dual specificity protein phosphatase 1 OS=Mus musculus OX=10090 GN=Dusp1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007742 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00581 all species →	Rhodanese	Rhodanese-like domain	Domain	Interproscan
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR036873 all species →	Homologous_superfamily	Rhodanese-like domain superfamily	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR008343 all species →	Family	Mitogen-activated protein (MAP) kinase phosphatase	Interproscan
IPR001763 all species →	Domain	Rhodanese-like domain	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10159 all species →	DUAL SPECIFICITY PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0017017 all species →	Molecular Function	MAP kinase tyrosine/serine/threonine phosphatase activity	Interproscan
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008330 all species →	Molecular Function	protein tyrosine/threonine phosphatase activity	Interproscan
GO:0033550 all species →	Molecular Function	MAP kinase tyrosine phosphatase activity	Interproscan
GO:0043409 all species →	Biological Process	negative regulation of MAPK cascade	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04459	DUSP, MKP; dual specificity MAP kinase phosphatase	EC:3.1.3.16 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.