Gene detail

Detailed information of gene18554.t1 in Actinoscyphia liui

Genomic Location: chr5:20507993...20521873
NR annotation: XP_020897057.1, LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 5B-like [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene18554.t1

ATGAGCGCGACAGAAGTGCAGTGGATTGGCTCGAGTTGTGGACGGCATGGCTCCTACACATTCTACAAAGGTTTCAGAATAAATTCCCATGGAACAGAAAAAAACTTTTGCTTGGGACAGTTCTACCTAGTGAGAAATTCAGACGATAAACCGATATGTGTAGCAGAGCTACAACTCATATGGCACGACTCAAGCAATGATAGTAAACTCGCTTCCGCGAGATTGTATTTCAAACCTGAAAATACTCCGTTTGGCAGGCTATCCATTCATGGAGAGGATGAGTTATTATATGCAGACGAGAAGGTCATTATTAAATGTGAAGATATGGTGCAGTGGGAATACAAAGGAAAACAATGGATTACAGGACTTATACCCTTACAAGAATCAGACTTTATACCTCGTCAATTTGACACCTGTATAGACCAATTTACTGGCAAATCAGAACACAAATACAAACTACAACAGACATCAATAGAGACTGCAGACAAAGACATTCCTACAGAGAAAATTATTATTCTTACTTTTCAAGCATATTGTCGATATAAAGCACTACAAAAAAGATTGATGGGCGGTATGATGATTTCAAAGTCTAATCTTAGTGCCTTGGGGGGTGTTGTGGCAACCAGTAAATCTACACGCGTTGTTTTCTGCCGGGAGTGTTTTAGTTGTCCGGATTTGGAAAACTTTCATCTATCTGGCGAAAATAAAGCTCCAGTCCTCAAAGGAAGACCAAGAAAAAAGAGAATACGAAGTTCAACGTTAGCCAAGGAGCTTAAACGAAAAAGATTCCTTGCAGATCTGGAGCGTGTTAAGAATAACCTTCCTTCCAAGAAAATCAAGTTGTCTGAGAGCGAAGAGGGTACAGAATCCGACCTTTCTGAAGAGAGTACCAAATCTAGTGAAAGTATGGACGAGGTTGAACTACCAAAAAGCAGAGTTGAGGCACCCATCCACAAAACCCACCCACCTAATGGTCTATTACCAATGTCAGTCAAAAAGGTTGTCATGGTTACTCATATAAATGACAAAACCAAGGCCCCACCTCCTCTGATTCCTACTACGAAACTTAAAACTGTTACTTCGCCACCTCCCTTGCATAAAGTAAAGATTAAACCCGAGGTTGCCGTGGTAACGAGGCTCGATTCTGGCCCACCTCCACTGTGTCCTATCAGTAAGCAACCAGAAGCTTCCACAAAGCCAACAAATCTTGTAGCGCCATTGTTATTGTCGAAGACTAAGCCAGAAACGTCTAGACCTCAACTCGACCCCGCCCTGCACCTATCATCTTCAAAGGGTTATACTATAATAAAAAGTACTCCTACTCCTACCAGCTCATCTGCGACGTCATCAAGCATAGTCTCTAAACCAGATGCTGCGCCGTGCCATGGAGTTAAAGCCATGGAACCACTTAGTAATGTAGACAGAAAGGCCGTGATGGAAAGTCGATCGGTCGGGATTGTGAAGATGGAAGGCAAAGAAAACCTACAGGATGCTAACAAAACTAAAAAGAAACGACTTCGACAGCCGACTAGCATGAGGGAGTTCAATGAGGACACTGCCGACGACGATGAAAAGTATTTCATGCGATCACTACGTGAATTCATGAAGTCTAGAGAAACGCCTATCTCTAAGATACCAGCACTGGGCTTTAAAAGAGTTAACTTGTGGACTATGTATAAAACAGCACAGAAACTAGGCGGCTATGACATGGTTACATCTAAAAGGCTGTGGCGACAAGTTTACGATGCATTGGGAGGAAGTACCACAATCACCAGTGCTGCTACCTACACGAGAAGACACTATGAAAGATTATTGCTTCCATATGAGCGCTTTGTAAGAGGACAATTAAATGCCAAGAAAAGTGGCCCACAACAGACCCCCAAAGCTGTCCAAGATTTCACAGACTCCAAAGAACAGACTAGTCACCCCAATACCAACAACAGCTCAGCAACCAATAAGATTAACGCTGCGTCTATCAAAGATAATGTGTCACGTATTACTGTGAATAACACTGGTAACGCCAGCAGTGTGAGTAAGGAGTCGCTGGAGAATAAAGAGATACCTGGCGTGACAAGCACCGTGGTGTCACGCGTTAGTTTAAACACTGTGGTTAAAGTCAAGCCAAATGGAGCAATTCCACCTTATTCTGTTAGCATTCAGAGTGCTAAGAAAGATGGCGTGACTCCATCAACGATAATTGTCACGAAATCTGTGAATGTTCCAGTGTCATCCACTCAATCTACACCGAGAAATTCCTTGTCGTCCACTCAATCTACACCGAGAAATTCCTCAACTCCTGCTTCCACTAAGTCAGCCATCCCCGTGACATCGCAAGTCTCCCAAAGGCGGAATGACGTGACAGCAAGTGTCACGCCACATCAGGCTAACAGCGTCAACCCACCTTCATCTCATAGTGTTATAGTGAACAGGCCTGTAAGAAGCCCCGTTAGTACAGCTCGCGTATCTTCGAATAAAGTTTACATGACGTCCAGTTTGGTGACACAAAAGCAGTCTACTCAAGTAAATGGGAGAGATGTCACACATACTAGCCAGTCTACAAATTACAAGATTGGGAACCCTGTGGTGCCTGAAGAACAAACGAAACTGCATAAACGTTACGTCAGTGAGTTAGAGTATGGTCAGGGAAAACACTCTCAGAACAAATACGGAGCAACTCCAGTTGCTGAAAAGTATGACCACTCCTGTTCACAGACAGCCAATAAGAAACTTCCAGTTAAATGTGTGATTGAGGATGTCCGAGCGCTGGAGTCGAGCAGTATGACTGAAAAGGAATCTCATTATAAACAAGACGGGATGTCAAGAGTAATCCCTTTGGAACCGCCGGTAAAACGACGAAAGACACCAAGCCCTTGTCACACCATCCCCCAGCATCAGTACCTCTGTCACGTTGATAAGTCAAGCAATATTAGTCACGCGACGACGCACACATCTCGTCACGCAACACCCAGCCCACATGTCACGAGTATGACACCTCAGAGCCGTAACACTGTCAGTGATTGTAGTCGAGGGCAAGAGAGAATTGTGCATGCTGATCTCGGACAGCCCGATATTTACGATCATAGCTCATTGAATCATCGTTCAGTCAACTCGCATTCTAAAGTAGTCGTTGACTTGACGACCGAAATTGAAGCTCAGAGCCAATCAAGCACATCTCTGGTTCACCATCGAACGTCGTCTCCGCTGTACGCCAAAGTGCCTCATTCATACCAACAAGATCACGTGATTAACACGTGCCAGAGAACCGAACCCCGTATCCCCGTATCCAACTCAAGACATTTATCAGTTACGCAACCCCAAGATTGTCACATACAACGGAACCATCACAACGAAACCACGCAAAAACACAATCACAACCTCACAGACTCCAAGGCTCTTGAAAACACGTACGTAAAACGTGAAATACAAACTGTAGAGTTTGATCCGCGTTCTGTGAATGCGGAAGGGCATCGAACTGTCACCCAGCGTACCTCCATGGAGAGTCCAGATGCGCACTTCCAGGAATGGCGCCGACGACAAGGCATGAGTGAATACCCTGCTTACATTACGACCAATCCAACTGAACCCAGACGAGGAGTCAGCCTAGCAGAACACCCCCTACCCTTACACCCCCAGACTCCGCCCTTAGAGCACAGATTCGTGTACGTCCAAGAAGACAACGGTATGCCGCCTCGAGTCATAGAGGAAGTGCCACTGATCCTCTCCTCCAAGCCTGGTATGTACTACCCCGAGGACTCGTTCTATGGTACTGTGCCATTTTACCACAGTGGATGGCCTGCAGCAGGTGTTGAGGGGTCTTTCAATGGTGATGCCGAGATGATACGTAACAATAACCATCTACGTAGCTCGTCGTGCATATTCATGCCTACGTCACAAATGTTTGGATCAGCAGCACCCATGACTCCCATTTCCCCACCCATTGTCAATCAAGGTCACGTGTCCGCTGGACCGGAAGCGATGCATCCACATTGTCTTATGACGTCACCATACGCTCATAACCGCGTGATGGTTAGCCAGACCCCCACGCGAACTCTACATTCATTCACGTGA

Transcript

gene18554.t1

CAAATATCCAACTGAATTAGAAAACGCGACGATAGGGATCCAAGCACTTCAAACTTCCAAGCATAACTATTTCGTGGTATATTTCTCGGTGATTTCTGATCATTTGGGATTAATTTTCGAAGTTGCGTGGAAAAAATGTGCTAGTTGATCGATGCATGACGTTTTATCGTTTTGATCACGTGGTCGGTAAACTCATTTTGATGCAATGTGTAGATTTTGAAGGATAAACTACAGAGCACAATGAGCGCGACAGAAGTGCAGTGGATTGGCTCGAGTTGTGGACGGCATGGCTCCTACACATTCTACAAAGGTTTCAGAATAAATTCCCATGGAACAGAAAAAAACTTTTGCTTGGGACAGTTCTACCTAGTGAGAAATTCAGACGATAAACCGATATGTGTAGCAGAGCTACAACTCATATGGCACGACTCAAGCAATGATAGTAAACTCGCTTCCGCGAGATTGTATTTCAAACCTGAAAATACTCCGTTTGGCAGGCTATCCATTCATGGAGAGGATGAGTTATTATATGCAGACGAGAAGGTCATTATTAAATGTGAAGATATGGTGCAGTGGGAATACAAAGGAAAACAATGGATTACAGGACTTATACCCTTACAAGAATCAGACTTTATACCTCGTCAATTTGACACCTGTATAGACCAATTTACTGGCAAATCAGAACACAAATACAAACTACAACAGACATCAATAGAGACTGCAGACAAAGACATTCCTACAGAGAAAATTATTATTCTTACTTTTCAAGCATATTGTCGATATAAAGCACTACAAAAAAGATTGATGGGCGGTATGATGATTTCAAAGTCTAATCTTAGTGCCTTGGGGGGTGTTGTGGCAACCAGTAAATCTACACGCGTTGTTTTCTGCCGGGAGTGTTTTAGTTGTCCGGATTTGGAAAACTTTCATCTATCTGGCGAAAATAAAGCTCCAGTCCTCAAAGGAAGACCAAGAAAAAAGAGAATACGAAGTTCAACGTTAGCCAAGGAGCTTAAACGAAAAAGATTCCTTGCAGATCTGGAGCGTGTTAAGAATAACCTTCCTTCCAAGAAAATCAAGTTGTCTGAGAGCGAAGAGGGTACAGAATCCGACCTTTCTGAAGAGAGTACCAAATCTAGTGAAAGTATGGACGAGGTTGAACTACCAAAAAGCAGAGTTGAGGCACCCATCCACAAAACCCACCCACCTAATGGTCTATTACCAATGTCAGTCAAAAAGGTTGTCATGGTTACTCATATAAATGACAAAACCAAGGCCCCACCTCCTCTGATTCCTACTACGAAACTTAAAACTGTTACTTCGCCACCTCCCTTGCATAAAGTAAAGATTAAACCCGAGGTTGCCGTGGTAACGAGGCTCGATTCTGGCCCACCTCCACTGTGTCCTATCAGTAAGCAACCAGAAGCTTCCACAAAGCCAACAAATCTTGTAGCGCCATTGTTATTGTCGAAGACTAAGCCAGAAACGTCTAGACCTCAACTCGACCCCGCCCTGCACCTATCATCTTCAAAGGGTTATACTATAATAAAAAGTACTCCTACTCCTACCAGCTCATCTGCGACGTCATCAAGCATAGTCTCTAAACCAGATGCTGCGCCGTGCCATGGAGTTAAAGCCATGGAACCACTTAGTAATGTAGACAGAAAGGCCGTGATGGAAAGTCGATCGGTCGGGATTGTGAAGATGGAAGGCAAAGAAAACCTACAGGATGCTAACAAAACTAAAAAGAAACGACTTCGACAGCCGACTAGCATGAGGGAGTTCAATGAGGACACTGCCGACGACGATGAAAAGTATTTCATGCGATCACTACGTGAATTCATGAAGTCTAGAGAAACGCCTATCTCTAAGATACCAGCACTGGGCTTTAAAAGAGTTAACTTGTGGACTATGTATAAAACAGCACAGAAACTAGGCGGCTATGACATGGTTACATCTAAAAGGCTGTGGCGACAAGTTTACGATGCATTGGGAGGAAGTACCACAATCACCAGTGCTGCTACCTACACGAGAAGACACTATGAAAGATTATTGCTTCCATATGAGCGCTTTGTAAGAGGACAATTAAATGCCAAGAAAAGTGGCCCACAACAGACCCCCAAAGCTGTCCAAGATTTCACAGACTCCAAAGAACAGACTAGTCACCCCAATACCAACAACAGCTCAGCAACCAATAAGATTAACGCTGCGTCTATCAAAGATAATGTGTCACGTATTACTGTGAATAACACTGGTAACGCCAGCAGTGTGAGTAAGGAGTCGCTGGAGAATAAAGAGATACCTGGCGTGACAAGCACCGTGGTGTCACGCGTTAGTTTAAACACTGTGGTTAAAGTCAAGCCAAATGGAGCAATTCCACCTTATTCTGTTAGCATTCAGAGTGCTAAGAAAGATGGCGTGACTCCATCAACGATAATTGTCACGAAATCTGTGAATGTTCCAGTGTCATCCACTCAATCTACACCGAGAAATTCCTTGTCGTCCACTCAATCTACACCGAGAAATTCCTCAACTCCTGCTTCCACTAAGTCAGCCATCCCCGTGACATCGCAAGTCTCCCAAAGGCGGAATGACGTGACAGCAAGTGTCACGCCACATCAGGCTAACAGCGTCAACCCACCTTCATCTCATAGTGTTATAGTGAACAGGCCTGTAAGAAGCCCCGTTAGTACAGCTCGCGTATCTTCGAATAAAGTTTACATGACGTCCAGTTTGGTGACACAAAAGCAGTCTACTCAAGTAAATGGGAGAGATGTCACACATACTAGCCAGTCTACAAATTACAAGATTGGGAACCCTGTGGTGCCTGAAGAACAAACGAAACTGCATAAACGTTACGTCAGTGAGTTAGAGTATGGTCAGGGAAAACACTCTCAGAACAAATACGGAGCAACTCCAGTTGCTGAAAAGTATGACCACTCCTGTTCACAGACAGCCAATAAGAAACTTCCAGTTAAATGTGTGATTGAGGATGTCCGAGCGCTGGAGTCGAGCAGTATGACTGAAAAGGAATCTCATTATAAACAAGACGGGATGTCAAGAGTAATCCCTTTGGAACCGCCGGTAAAACGACGAAAGACACCAAGCCCTTGTCACACCATCCCCCAGCATCAGTACCTCTGTCACGTTGATAAGTCAAGCAATATTAGTCACGCGACGACGCACACATCTCGTCACGCAACACCCAGCCCACATGTCACGAGTATGACACCTCAGAGCCGTAACACTGTCAGTGATTGTAGTCGAGGGCAAGAGAGAATTGTGCATGCTGATCTCGGACAGCCCGATATTTACGATCATAGCTCATTGAATCATCGTTCAGTCAACTCGCATTCTAAAGTAGTCGTTGACTTGACGACCGAAATTGAAGCTCAGAGCCAATCAAGCACATCTCTGGTTCACCATCGAACGTCGTCTCCGCTGTACGCCAAAGTGCCTCATTCATACCAACAAGATCACGTGATTAACACGTGCCAGAGAACCGAACCCCGTATCCCCGTATCCAACTCAAGACATTTATCAGTTACGCAACCCCAAGATTGTCACATACAACGGAACCATCACAACGAAACCACGCAAAAACACAATCACAACCTCACAGACTCCAAGGCTCTTGAAAACACGTACGTAAAACGTGAAATACAAACTGTAGAGTTTGATCCGCGTTCTGTGAATGCGGAAGGGCATCGAACTGTCACCCAGCGTACCTCCATGGAGAGTCCAGATGCGCACTTCCAGGAATGGCGCCGACGACAAGGCATGAGTGAATACCCTGCTTACATTACGACCAATCCAACTGAACCCAGACGAGGAGTCAGCCTAGCAGAACACCCCCTACCCTTACACCCCCAGACTCCGCCCTTAGAGCACAGATTCGTGTACGTCCAAGAAGACAACGGTATGCCGCCTCGAGTCATAGAGGAAGTGCCACTGATCCTCTCCTCCAAGCCTGGTATGTACTACCCCGAGGACTCGTTCTATGGTACTGTGCCATTTTACCACAGTGGATGGCCTGCAGCAGGTGTTGAGGGGTCTTTCAATGGTGATGCCGAGATGATACGTAACAATAACCATCTACGTAGCTCGTCGTGCATATTCATGCCTACGTCACAAATGTTTGGATCAGCAGCACCCATGACTCCCATTTCCCCACCCATTGTCAATCAAGGTCACGTGTCCGCTGGACCGGAAGCGATGCATCCACATTGTCTTATGACGTCACCATACGCTCATAACCGCGTGATGGTTAGCCAGACCCCCACGCGAACTCTACATTCATTCACGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BM75	AT-rich interactive domain-containing protein 5B OS=Mus musculus OX=10090 GN=Arid5b PE=1 SV=3
Q14865	AT-rich interactive domain-containing protein 5B OS=Homo sapiens OX=9606 GN=ARID5B PE=1 SV=3
E2R9X2	AT-rich interactive domain-containing protein 5B OS=Canis lupus familiaris OX=9615 GN=ARID5B PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004871 (this species only)
Transcription factor family	ARID · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043151 all species →	Homologous_superfamily	Bromo adjacent homology (BAH) domain superfamily	Interproscan
IPR051232 all species →	Family	AT-rich Interactive Domain/SWI1 Chromatin Remodeling	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13964 all species →	RBP-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25857	ARID5; AT-rich interactive domain-containing protein 5	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.