Gene detail

Detailed information of gene19084.t1 in Actinoscyphia liui

Genomic Location: chr5:27729054...27744177
NR annotation: XP_032220645.1, alpha-L-fucosidase [Nematostella vectensis]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene19084.t1

GAACACGCAAAGAATCTGCAAGTAGATTTGAAAGTAGAAGTTTTCCAAAGTTATCTTGCCTGTCAGGTGTTCCAACAACTTGGAAAAACTACTTTCAGGTGCTAGTTTAAAGCAATGAAAACCACAATCACCCAAATATGTGTTCTTTTGGTTGTCATGGCAACACTGACAACCTCCGAGTACCTCCCCACATGGGAGTCGCTAGACTCTAGGCCACTCCCAGATTGGTACGACAAAGCCAAGTTTGGTATCTTTATGCACTGGGGACTATATTCTGTACCAAGTTTTGGTTCTGAGTGGTTCTGGAAAAACTGGCATGACGGAGATGAGGCATATGTTAATTTTATGAAGAAAAATTACCCACCAGGGTTTAGTTATGCTGACTTTGCACCGATGTTTAAAGCTGAGTTCTTTGATCCTGATGTGTTTGCATCGCTGATTGAAAAATCTGGTGCAAAATACTTTGTCCTGACCAGTAAGCATCATGAAGGCTGGACTAACTGGAAGTCAAACGTATCATGGAACTGGAATTCTGTCGATAGCGGACCTCATAGGGATCTTGTAGGAGAGTTAGCAAACTCCATTCGTGACAAGACGAATGTCACATTTGGTTTGTATCACTCACTGTATGAATGGTATAACCCATTGTACCTTCGAGACAAGGAAAACAGCTTTAAATCCCAGCAATATATTAACGATATATTAATGCCTGAGCTCTACGACATGGTTAAAACTTACAAGCCAGAATACATATGGTCTGATGGGGACTGGGAAGCATCAGATGTTTACTGGAATAGTAAAGAGTTTATTGCATGGTTATTTAATGAAAGTCCTGTAAACAGTACCATTGTAGTAAATGATCGCTGGGGCAAGGGGTGCAGATGTAAGCATGGTTCTGTCTATACATGTGCTGATCGCTTCAATCCAGGTCATTTGCTCAAACATAAATGGGAAAATGCAATGACTGTCGACAAGACATCATGGGGATTCAGGCGAAATGCAAACATTGGTGACTTTCTCACTATTGAAGAACTTATTGGAAATCTAGTTTCTACTGTCAGTTGTGGAGGGAATATGTTGATGAATGTTGGTCCAACTGCTGATGGTCGAATTATTCCTGCTTTCCAAGAACGTCTGCTTCAGATGGGAGAATGGTTGAATGTTAATGGTGAAGCTATATATGAAACTAAACCATGGAGAGCACAGAATGACTCCTTTACTAAAAATGTCTGGTACACCTCTAAACCTGCTGCTGTCTATGCAATAGTACTTGATTGGCCAAGCTCAGATGAGCTGATATTAAGACAGCCAATCACAATCGAGGAAACCAAGGTCACTATGCTTGGTTTATCAGAGGAGATTCCTTGGGAACCCTTTGGGTTCAAGGGAGGAATGATAATTAAAGTGCCTTCAATCCCAATCAATGAGCTGCCAACCAAGTGGGCCTGGGTCTTCAAGATGACAAACGTGGAATAGCTTAGTTATTAACCTATAAAACCGGTATGTCCAGTATAACCGGTATGTGAAGTATAACCGGTATGTCCAGTATAACCGGTATGTCAAGTATAACCGGTACATGTCCTATAATACTGGTATTTATTAAATGAAATGCATTATTACTAGTTATACAATGCTTTTGAGTTGTATACCGTGGAATATTCCACTCATTACATGTATTTTCCTAGTATACACACGAGCCTTTAGGCGAGTTTGTATATAGAGAAAATACAAGTGACAAGTGGGATGTTTCATGGTATACAACAAGAAGGCATTGTATAACTATTTTATCCCACACAACATAGAAAATACCTACAACCGCAGTGCCTGACGGGAAGGAAGAGTGGAATACTGCCAAATGTTCAACGGCAATACTGCTCTCTGATTGGCTGTATTTTCTATGGTGTGGGATAAAGTGGTATACCGGCTGATAGCAAAATTATTGTTTTCAAAATCTGCTTTTGAAAAAAGTAAGCAGATTTTGAAAATCTCGCTAAATAAGCGTTGGATAGTGCTGAGACTTTAAGACACTGTTAACAACATTTGAAAAAATCATTCCACTTTATTGACGCTGACTTGATATTTTCCCTAACTTTAAAACCTCACAAGAACATTGCTTGGGCTGCCTGTGGATAAACTAGAAACAAAGCCAGTTTGACTCTAATCACCCTAAATGACCTAAATTTTCGATGTTGACAATCTTCGAATTTTTTTGAAAGTAGAATTTTTTTATAAATATTGTTTTTCAACTAAAATAAATGTACGTTTATGTATGGCTCTTTGATTAATTAGTTTGTTTTTGTTATTTAGATAAACCTTTATTCCCAGAAATCTTTATTTCTTACGTAATAAAGTAAATTTATCCCACGCGAGCGCTTAATAAGGCTCGCGCTATGACGTACATCTTCGTCATAGTAACGTTATAATCTGTATATAAATGTGCGCAACAGCAAAACTGAGCATTTTGATCACGACTCTCGTGTAGGATGTTTGTCACATTTCAAAGGATATTTTTCTACAAAAACGTTTTTAACGTGGAGTCTGTGGACCACAAGAACAAGCTAGCTGTAAATTTGGATTTGTTTTCAACAGTTGGTTATAGCTATCTGTTTGTCTATGGAAGATGGATTCCACTGAATCTATGAAAGGTAAGTTAAAATCCTGTCATAGAATCGTTAAGTTTACAACGAGTTTACAATGTTTCCAACTGTTGACTACTAAATAAATAATGTAACAACCGTCCATGCGATTTTTCATGAAAATTGAAACCAGTTGAAAGCCAAACGCACGGAATGCCTCTTGCTTTGTGACGTATGGAGTGCGCGCATTTTGCGAATTACCAATCTTGGGGGAGGGGAGGATTAATAATAATAACATTTATTTAAACACGATAGTTGATTGGCAGCATAGCTGATGTGGTCGTGTATCTATAAACTTACAATTTTATAATATTCTCTTGAACTAACCCATCCCCGAAAACTATGAGAACTTATGCGAATCCCAACTATTTACATTATAAAAACCTTTGTTATTTACATTACAAATTAGACAAATATAATTTAAACTAAAATCCCTTCTCAGTCTGTTAAGCGTTCAGCCTCTTAGCTGCGCATTTGAAACTGTGCACAGTATCAATTCCTTTTGTGCTATTGTCCAATGAGTTCCAAAGCACAGCTCCTTGATAATTGATTGACTTCTTTAAGAAATCCGTCTTTGGTTTAGGCACTGTTATCGACATTTGCTTCCTCAAATTGTATTGATGGTCACTCTTTGCGAATAGAGACTGTAAGGGAAGAGGAGCGTATCCATGATAGCAATTGAATACTAACAATTATTGATTGATGACATAAGCGCGCGCATTCTGACCACAACATTGAGGGGGTGGGAGGGTGAGGCGCGCGCTTTGTGCAGAGAAGAAGAGCTAGGAGTGCGCACATTTTGCAACCTTTACAACTTGCGACTTTCATGATTTTAGTTTTATTATTTTTCCCTTTTTATAATAATATTATTACAAAATTGTTGTATAAATAGTTACAAGATTCACTTCGTAATGCAATAAGATAATTGATGTTACCTCGTGATACCCAAATGTGAAAAATAAATATAACGAAAAAATATAACGAAAAAATATTATTCCATGACACCCATTTTCTTGTCCTCACTCTCAACTGTTTTTCTTTTGGTGATCGATATTTTAAACAAACCAATGGTGTTGCTATGGGCACTAAAATGGGTCCCAGCTACGCTAATTTGTTTGTTGGATATATCGAAGAACTTATTTTCGCACAGTATGCTGGCCCCAAACCTGATTTTTTCGGTCGTTACATTGATGACTGTTTTGGCGCCACATCCTGTTCTCGCTCTGAACTTGATTCTTTTATCTTTTTTGTCAACTCTTTTCATCCTGCTCTTGAGTTTACTTGGGAGATCAGTGACTCTTCTGTTGCCTTCCTCGACATTCTCGTTAGCATTTCTGGTAATCATCTCTCCACCAGTGTTCATTACAAACCTACTGACTCTCACAGTTATCTACTTTATTCATCTTCTCATCCTCAACACACACTTGATTCTATTCCTTACTCTCAATTTCTACGTCTTCGTCGCCTTTGTAGTGACGATTTGGATTTTTCTAATCAATGTCAGCTTATGCGTTCTTATTTTCTTAATCGTAACTCATATCCTGATGATGTTGTTTCCCGCGCTCTTGATAAAGTTGCCAATGTAAGCCGTGAATCTACTCTTACTCCTACGCCTCGTACCACTAACAATCGCACTCCATTCACTAGTCTCACCTATCATCCTCTCAATCGTGCCATCAAACCCCTCATTAATCGTAACTTTAATTTACTCTCTTCAGATACTAACACGTCTAATATCTTTAGTGAGCGTCCACTATTCTCTTTCAAACGTGATCGTAACATTCGTAGAACCTGGCACTGTTCGCTGCTCCCGTAAACGTTGTAATACTTGTCCTCATATTGTTACCCGCTCATCTGTTAGTGGTCCCAAATCATCGTATCGTATTAACGACCATTTCAATTGTGTAACATCTAATGTTATTTATTGTATCCATTGTACTTTATGTAACCATCTCTACATTGGTGAAACTGGAAGACGCCTTGGTGATCGTATTCGAGATCATATCCGTGATATTGGCCTAAACGATAATACCAAACCAGTTTCCCGCCATTTTAACTCCACTAATCATAACATTAATCACATGGTTGTTTTTGGCTTATGTTTGATTGTCGGCACTAACGAAGACCGCAAAACTAAAGAGATGCGCCTCATTCATTCATTAGGCACTCTTCATCCTAACGGCATGAATGAACGCTTTTCTTTCAATTAACTGCCTTTTGTTAATTTTACCGCTTTTTGTTAATTTTACCGCCTTTTGTTTCTCACTATTTTAATTACTATTTTAATTACTTTCGCCTTCTTATTAGATTGCTTTTCTTGCCTAATCACACCTATTGTCCCCTCCCCATTTTTTATCACCCTCCCATTGGTTCATCACTTCACCTTCCCCTTTATAAACCCTACTCCCACCTCTACTACTCTCTTTTACTCCGACGAAGGGCTCAGGCTCGAAACGTCAGTAAGTTAAGTAACTCTTTCTTTTTACACGGTGTTTCAAATTTAAATCCAATCACCCATTTTCTTTGATGCGACGGGGAGGGAATAGGAGAAGTATCTGTCGTACGACTTCCATATATGGGTGTACGTATACACGGCTCTGATGTACATATACAGGGCTCTCATGTACACAGAAGGCTGAAAAGAACTTAGATAAGTTTCAAAGACTCAAATCATCTTCAATTAGAAATTAAAAAGAACTTCGGTGAAGAGCGTAAAGATTCGATCCCAGCATTATTGATTGCCTAACCCTACCATTTACCCTAAACCTAACCATTAAACCATGAAGCCAATTCGCTTGAGTGAACCGGAACTTTTGTGTTATTTATAGAACGATGCATATTTTAAAATAACCACGTATATGTACATATGATGGCATGCATAATTTATAACCCTCTATGTGTACATGAGAGCCTTCTATATGTACATGAGAGCCTTCTATATGTACATCCATATATGGATATCGTACGACAATCTCTACGGGAAAGTAGAGAATTCGTTCCCAGGTTTTCCCAAGGGAATCGGCCCGAAATCACATGACAAGAACATGACAAGAATCACAAAGAACACGGAAAGAAATATCTGCAAGTAGATTTGAACGTAGAAGTTTTCCAAAGTTATCTTGCCTGTCAGGTGTTCCAACAACTTGGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C3YWU0	Alpha-L-fucosidase OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_56888 PE=3 SV=2
Q6AYS4	Plasma alpha-L-fucosidase OS=Rattus norvegicus OX=10116 GN=Fuca2 PE=2 SV=1
Q9BTY2	Plasma alpha-L-fucosidase OS=Homo sapiens OX=9606 GN=FUCA2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000718 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01120 all species →	Alpha_L_fucos	Alpha-L-fucosidase	Domain	Interproscan
PF16757 all species →	Fucosidase_C	Alpha-L-fucosidase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR000933 all species →	Family	Glycoside hydrolase, family 29	Interproscan
IPR016286 all species →	Family	Alpha-L-fucosidase, metazoa-type	Interproscan
IPR031919 all species →	Domain	Alpha-L-fucosidase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10030 all species →	ALPHA-L-FUCOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004560 all species →	Molecular Function	alpha-L-fucosidase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006004 all species →	Biological Process	fucose metabolic process	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0016139 all species →	Biological Process	glycoside catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01206	FUCA; alpha-L-fucosidase	EC:3.2.1.51	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.