Gene detail

Detailed information of gene19204.t1 in Actinoscyphia liui

Genomic Location: chr5:29422700...29428759
NR annotation: XP_020900244.1, serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene19204.t1

GTTGGATTTTGTGAAGTGGAATCCATGTAGTGATTCAATCTTCGGCCATCCTGGCCATTTACATAGCAATCGATTATTTTTAGTCCTCGAATCAATAGTATATATATTTTTCAAGGTTTCTTTCATGTGCATTTTTCCATTTAAGGAATGGCAGTTGCTAATGGAGAAGTGCAGTGGTGCTTCTCCCAAGTTAAAGGAACTGTAGAAGAAGAAGTCTCTGAAGCGGACATTATATCAACTGTCGAGTTCAACCACGACGGGGAATTGTTGGCTACGGGCGACAAGGGAGGACGAATTGTCATATTTCAAAAAGACGACTCACCTAAAGGATCGCCACGTTATGGAGAATACAGTGTTTACAGTACATTTCAAAGTCATGAGCCCGAGTTCGATTATCTTAAAAGTTTAGAAATAGAAGAAAAAATCAATAAAATCAAGTGGTTGAAACGACAAAATGCTTCGCATTTTCTCCTGTCGACGAATGATAAAACAATAAAACTATGGAAAATTTCAGAAAGAAATTCTAGGGCTTGTAATTTCAACCTGCGTGATGATCTAGGAATGCCGAGGGATCCCAACGACATTACAGAACTGAGAATCCCAGTGCTTAAGCCTTCTGATCTAGTTGTTGAAGCAAGTCCCAGGAGAATCTATGCGAATGCACATACATACCATATAAATTCCATCTCCGTAAACAGTGATGGCGAAACGTATTTATCAGCAGATGACTTGAGAATTAATCTGTGGCATGTAGGAATCAATGGACAAAGTTTTAATATTGTTGATATTAAGCCTACTAATATGGAGGAACTTACTGAAGTTATAACTGCGGCAGAGTTCCATCCAATAGAATGCAATACTTTTGTATACAGTAGCAGTAAAGGAACAGTACGTCTTTGTGATATGAGACAGCAAGCGCTTTGTGACAATCATGCAAAGTTATTTGAAGAAGCTGAAGATCCAGCAACTAGGTCATTTTTCTCAGAAATAATCTCATCCATATCTGATGTTCGATTTAGTCATAATGGCCGCTACATGATCACTAGGGATTACTTGACTGTTAAAGTGTGGGATTTGCACATGGAGAAGCAACCAGTGGAAGTGTACAGTGTCCACGACTATCTGAGAAGCAAGCTGTGCTCCCTCTATGAAAACGACTGCATCTTTGATAAGTTTGAATGTGTCTGGAATGGAAATGACTCGTCAATTATGACTGGTTCATACAATAATTTCTTTCATATATTTGACCGTAACTCTAAGAATGATTTATGCTTGGAGGCGTGCCGAGAGTCCATTAAACCCAAACAAGTGTTGAAACCCAGGAGAGTCGCCATCACAGGGAAACGAAAGAAGGATGATATTACCGTAGAATGTTTGGAATTCAGCAAAAAGATCTTACACACGGCCTGGCACCCCAAGGAAAACATCATAGCAGTTGCAGCTACAAATAACTTGTATCTCTTTCAAGAGGACATAGCATCATGAACGACTGTGTATGTATGACTAGCATCTGTGTGTCCTTTGCCTACCATAGGTGTGGTAAATATACACCAGTCTGTAGATCTAAGACAATTCATTGTACCGTATCTTTCTAACAATCTACCAAATTACAACCATTTGTTATAACTTTGGACAATGTAAAAATAAAACTTAGTATCTTATGATATCCAATTCTTGGTCTCTATGCTAGAGTGGCTTGCTATGAAAGGTGTTTTTATTTTATTTAATGGCAATTCCAAATGTTTTATAATTATTTTCACGTCTTTATACATTACAAAATCCAAATTCAATATCCCGTAATTTAGAATTGTTGCAAAGTTTTGCAGTTCTGTAAATGTGTGTAAATGTGGAGGCTGTGTTTTGTTTTGATATTTCTAGGGAAATACATTCATTTTGATACAAATAATCTATCAAGTAGATTGGGTGAAACCTTTTATGAACTATAATCTATCTTTATTTAAGTAGCAGTCTATGAAACTACTAATATCATGATGATACTTAAGATCTTGCTGTAATAAAAACATACTTCAACTTCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIY5	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Gallus gallus OX=9031 GN=PPP2R2D PE=2 SV=1
Q6NY64	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Danio rerio OX=7955 GN=ppp2r2d PE=2 SV=1
P36876	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Rattus norvegicus OX=10116 GN=Ppp2r2a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006479 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR000009 all species →	Family	Protein phosphatase 2A regulatory subunit PR55	Interproscan
IPR018067 all species →	Conserved_site	Protein phosphatase 2A regulatory subunit PR55, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11871 all species →	PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000159 all species →	Cellular Component	protein phosphatase type 2A complex	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04354	PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.