Gene detail

Detailed information of gene19232.t1 in Actinoscyphia liui

Genomic Location: chr5:29737753...29742098
NR annotation: XP_031563026.1, homeobox protein Hox-A5-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene19232.t1

ATGTCTGATCCATCGATGTTTTCCCAGTGCCCATGAAGGAACTATTCGTTGCTATGAGTTGATGTGTATGCACATTGGGTTGGTACCAGTACGATTAGCTGCCAAACACATCAAAAAACTTGCAACGACGCTGTTTGAGTCTTCCCTAGGAGCGCACTACCCAATCAGCCTTTTGCAATGAGAAATTGCATGGTTATTAACCAATCAGCCTTTTGCAATGAGAAATTGCATGGTTATTAACCAATCAGCCTTTTGCAATGAGAAATTGCATGGTTATTAACCAATCAGCCTTTTGCAATGAGAAATTGCATGGTTATTAACCAATCAGCCTTTTGCAATGAGAAATTGCATGGTTATTAACCAATCAGCCTTTTGCAATGAGAAATTGCATGGTTATTAACCAATCAGCCTTTTGCAATGAGAAATTGTATGCCTCTTATCCAATCAGCGTTCTTCAATGCAGAATGGTATGTTTCTCGCCCAATCAGCGTTCTTCAGTGAGAAATTGTCTACATCCCTCTCAGCAGCCAATCAGTGTTTTCTCAATGAGAAATTGCACGTTTTGTAAGCAAACCGGCGTTTTTAGACGAACAACTCGTTTCAGACAGGACAAGCCGTCTTAGTATAAAACCGAACAAACACGGATTTGGACGTAAAAATCGTCTGAATTTGTTCGTCGATTTGTTCGTCTATGAAGACGATTTTTCGCTGTCGACTTTTTCGTACGACTTTTACGTCCAAATTCGTGTTTGTTCCGTTTTCATACTAAAACGACTCGTCCGTCTTAGACGACTTGTCTGTACGTCCTCTAGTGTGAAAACGTCGTACGAAAAAGTCCACAGCGAAAACTGTGAAAAATTAAGGAACTGTACATTTCCATGTATTTTTTTATATACGAGAAAAAAAGGATAAAATCTACAAATGTGTTATAAGCCATCGAAATGGTAGGAAAGGTTTAATCTTTGATAGAAAAAGTGATTCAGAAAATGAATTGTTTTGATCGGTGACTCGTTAAATATTGATAGTTCTCAAAAGCAATAAGGAATTGAGATATTATTGAGCGATACTGAATAACAACATGGCCGACTAATCGCCCGTCATCAGCTCCACAAATTATTGCAGCGCGATCAAAACGTCTCTTTCGCGTACTAATCCCATAAAAAATGTTGTTTTTTAAATTTCTTTTTTAACATAAAAGTTAATTTCATTGTACATACATAAAAATAAGACTATGAATATAAAACAAAGGCTTCATTCTCAATGAATTACGTTCTATTATCAAACTAAGTTGAAATAATCAAAGCATTTGTTCTAATGTTACAAAATTGAAGTCAAGAAGTGCCAGGTTGAACTCCACTTTCACAAAAAGTTCGGTGCGAGTTAATAGTGAAGATGAGCCGTAACGATAATTACATAATTAGTAGTTAGTTTGATGAGAGCCACGCCAGAAACAATAATTACACATCGGCCAGTAGGAACTCGTAGAATTAAATAAATTAGACGAAACAGCGGGGAAGGCCAGCCAAATCTTGCACACAGTCATTAGCACGATGTAGGGGTCGTAGTTCCTATAGAGCTATAGAACACCTAATCATGGCAATGTACATTGAATCAGAAATCTTGTCGGGATATCTCCAGCGGTATTTACCCTGCCACTCCACAAGTTAAGATGCTTTTACAAGGTTTATCATATCGTTAGTTGACGATGATGGGGAGCATTAGTCAATACAGTGAAATAACCGCCTCGCATACCCACTATTCGGGCAGATGGCCCCGTTCATTTGATACTTGCATTTGATTGGCTGGTTTTAACGCGTCGAGTTTCAGCTGCCGTGCGACAATGATGATAAAATGGATTAGAGAGTGGAATTTCCCCTGCATATTAAGTATTAATGATGGCTTAAGTACTCTTACTGATCAGCGTTTGCTGACTCTTTGAAATTCCCATTTAAAAAGCCAGCCTGTGATCATGATAAGTAGTGCACCTGAGATATACTTGACTTTAAATCACATCGAATGCATATACGTAGTGTTTGTGTTTGTTGAACGATACATTATAACAAGGGTGATGGTATTTGCGCATATACAAGCGTTTTTAAGAAACATCTTTTCCTAACTGGTTTTCGTGATGTACAGTAGTGACTTACGGCACCAGGACACTGCATCTTAATCAGTTAAAGACTAAACAATTAAGTTAGATGCGAAAATTAAATATGTCATTTGCCACTGATTAAGCGCGGGGCGGGCACTGACTTCTATTAGGAGAGCCACCAACATAAAGATGAGTCGCCTATCCGTGCAGCGACATTCCATTACACAACAACCAAGGCCTCATTCAGCTTACTAACTCCACGAAGGTTGGTGGATTGTTGAATTGTTCTTTGAAATTATAGATTATAAAAAGGTAAATTACTGTTCTTTTTTCTAGGATTTCTTCGAATGTAATATTGTATGGAGACAGCGCGCGGTGATTCGGGTTTTCCCGCTCAAGTGATGGTCTCGAAGAGTCTCTCCCCTCGACGCTCGCCTCCACCTTTAGTGTCTATGGAACCACGACGAGACTCACTCGTAGGTTTACAAAGGCTTGTTTACAATGCTCAAGTGTTTTCTTCACAAGTCAACGAGAAAGACAAAGAGCCAGTCACAACTACTCCAAATGATGACTCGAACAATCAACAAGACACTGTTCCAACCATGACGGCACAGCAAGAGCTTCAAAACGAGACTGCACATTTACATCAACGAATGGCTAGTCCCAAACCTAAACGCAGCCGTACATCCTTCACGCCTGCGCAGTTAGAGCGTTTGGAGGACGAGTTTCGCAATGACATGTACGTAGTGGGATTAAAACGAATGAAACTCGCCAACGAACTACTCCTCAGTGAACGGCAGGTGAAAGTGTGGTTTCAAAACAGGAGAATGAAATACAAACGAGAGAGAGCAAAACTACGGCCTTCGATGGAATCTCATAAATAACTATTCCCCCCACAGGGGGAGGGGTGGGTAACGGCTGTCTTCCCACCCCACCCCCTGGTATCTCTACTATATATGTCAAGTTCAAAACAAGTATGGTTTCATATTATATGGCAAGGTAATTTTACAAGCTGTGATTGGTCAATTTGCGTTCCATAACTTGTTGTACGGACTGAAAAATGATACACACGCTTTGCACTTGGGCCATACATAGTCTGTGAAAAAACACAGTCCATAACTTATGGTACGGACCTCGCAATCGGTTAATAAGAGGTATATATCAGGAGATGGAATAGAAATGAGAGAACAAGGTAATGTCCTCTATCTAAATAATGCATCGTGAATAGACGATCCTCAGGACAGGGCGGGGAACACGGTGTTAAAACCCCGCTCACTGGGGAAACATTTTTCGTTTAAAAAAATCCATCTAAAACGCCACTCTTATTGAAAATCCACATCTCTCCGTTATATCCCGTCTCATCTCATAAATTCCCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q804S6	Homeobox protein EMX1 OS=Danio rerio OX=7955 GN=emx1 PE=2 SV=1
Q6GLB9	Homeobox protein EMX1 OS=Xenopus tropicalis OX=8364 GN=emx1 PE=2 SV=1
Q04742	Homeobox protein EMX1 OS=Mus musculus OX=10090 GN=Emx1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000082 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR050877 all species →	Family	EMX/VAX/Noto Homeobox Transcription Factors	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24339 all species →	HOMEOBOX PROTEIN EMX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007417 all species →	Biological Process	central nervous system development	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene19232.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.