Gene detail

Detailed information of gene19252.t2 in Actinoscyphia liui

Genomic Location: chr5:29918887...29939986
NR annotation: XP_020908509.1, regulator of G-protein signaling 12 isoform X1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene19252.t2

ATGTCCATTGATGTACGGACTGTAGATTTGTGCCGTGGTCCTGGAGGATTTGGCTTCACGCTTTCAAGCCAAAGTCCCTGTGTACTCAGCTGTATTTTAGCTAGCAGCCCTGCTCATAAAGCTGGCCTCAAACCAGGCGATCAGATATTGTATGTGAATGGGAGTTCAGTGGAGAAATCGCCTCACGAACTGGTCGTCAAGTTGATTGCTCGTTCGCCTAATGGGATCGTAAACCTTGGGGTAAAGAATCGTGCTGCTTTATTGACTGGTTCTACGACCGCAGATAAACCAGAAACTCATGATCCTAGCGACAAGGACACTGTAAATGATCAAATCCTCAATCGTGTAGATAAAGTAGTGGAAGAGTTGAAATCTGGGCATCTATCTATCAGCAAACAGATTCCACTGCGCAGTAATAATGAGCAAGTTGAAATAGACGAAGATGAAATTGTAAGCGACGAAGAACTCAAAGCTTCTTTTACAGAAACTCTACGATCTGAGAGTTCTTCAGATAATGTATTTGTGGATAAAAATCATATCAGTAATCGGCGGGCTAGTGAAGGAGATGTACAGCCTGGACATCCTACACACAATTTAAACCGACTCCTCTATCCTGTCCTGACTCCGATAAAACCCGACAAAAACACACACTCCGAGAGAGCTAATTCTGAAGCCGATTTGAGAGCGATTGTTGGGTACCTAGGATCCATTGAACTCCCTGGGAATTCTAGTTTACAAACAGCAAGTTTACATGCAATTCGAAGCTGCGTTCGACGTCTTCGTGCACAACAGAAGGTCCATGTAATATTTTTGTTAGAGATTTCGTGCCTTGGGATACAGCTGGTAGATAAACATGGGAAACGAATAGTTACATATCCTATTAAGTCTCTAGCATTTACAGGCGTGTGTTCCGATGATAAAAGAGTATTTGGTATTGTTACAAAAAAAGCGAACGAAGGAAATCGTCCCAGCAGCTGGCACGAAAAAATGGATATTTCTGGTAGTACCGTCAATTGCTCATGTCACGTATTTACTGTGGACCCAGAAATCTCATTACACGAAGATCACCATTCGATTGCTGAGAAATTTCACATTAACTGTGCTACTGTGAATGGAAACTGTAAGGAATTCCTAGATTCTTCTTCTCCAATTTTACAGGCTATTAATGAGCTTTTTAAGGAAAGAACTGAATCTCAGTCATTTTCTTCCAGCCAGTCCGAAAATAATGAAATGGAAAGTGGAAAAATACCCCCAGATACTGAAGAGGGCAATAACCCAGGAAATGGACACCCAGATCATGCCCAAGATGCACAGTCAGAGCTTCTGCATAATCACGTGCAGGAAGAAAGTATTACTCCAAATGAAGTAATAAATGAATGTGTTATGGAAACCCCAAAACACAGGATTCATGTGAAAGTTACAGACTATCGCGAATCAACTAATACTAGTACTGTTCAAATATCATCTATTGAAGAGCCATGTAAGAGACGTAGAGTGCTGCAAATTGAGCGAGTTGCCGTGTTCCCCCCTGGTAAAACAAATGGGATTGTAAAAGAACAAGTTACTTCTAGTGAAACAACAGATCTAGATAGTACTGGTGATGGTGATATGGACAATGGAAGGAAGGAAGGTCAAGCAGTAGATCTCAACCAGGCTGGACCCAATGTCTCTGATACTCCCTCTCCAGATTCACAGCTGGCATCACATAACAATAAAGATACCAGCCAAGATTTAAAGATAAATCATTTCCCATTTAATTCTACTTTACGTTTGAGCCACTCTGCTGAGAATCTGTCTCACAATGACTATGATACAGTTGTCTCCAGTAGCTCAAATCTCAATGTCAGCCCAAGTGTATGTTCCAGTACCCAGAGTGTACATAGTCTGGGGAGTATTGCTGGGGAGTTGTCAAGTATTCAAGGACGTGTGGCTCAGTGGTCTCTTGGATTTGATAAACTTATTGAGGATCCCATCGGCTTGAAATGTTTTCAGGAATTTCTTAAGAAAGAGTTCAGCGAGGAGAATATTATGTTTTGGATGGCATGCGAAGAGTTTAGAAATATCACCACTGAAAAAGAGCTCAAAGCAGCAGCCATCAGCATATTTGATGCTCATCTCAGCCCTCATGCAACAATGCCTGTGAATATTGATAGTTCTGCTATTAAACTTGCCGAAGAACATTTTGCGAACCCAACAAATGATATGTATAGACTGCAACAACAACAGGTGTACACTTTAATGAAGTTTGACAGTTATCCAAGATTCTTAAAGTCAGACATGTACAGACAATGTCTTGTAGCTGATATAGAAGGACTTACTCTACCATTTGATGATGGCAAACCTGACAAAGGAAAACTCTCTAAAAAGGGCAACTGCTTGTCACTATCTTCAGAGGACTCAGAATGTTCCAGTGTAAGCAGTCGAGGGAGCTACACTTTTGAAATCAAGCGTTCAACGCGTGGCTGGGGAAGACGAAGCAGTAAAAAGAGTTCAAGTTCTTATGATGAAACAGGAGAGAAGAAAAAATCCTTTCTTCCATGGAAAGGAAAGCAACCTAAGAAAGGAGGAGCCACTCGTCCATTTGACAGTCAACCCAGCAGTACCCGCAGCTCATTGTCGTCTTTATCTGATTCCTTCCCAAGCATAAGTTATTCAACCGAGTCTCTAGAGGTCCGACGTGAAAGCGATTCGTTCCAGTTCTGTCGTGTAGTTCTACCGGACCATTCATCCACCATTATTACTTCCAAACAAGGACAGACGTTACGACAGGCTTTAGCACAGCTTTGTGAGAGACGACATATGTCTCTCGTTGCTACGGAGGTCTTTATTTGTGGCTCGGATAGGCCTGCACAGTACAAAGAACTCGACGCTGACATGTCTGGTATGGCTGGCAAGGAGATCAACTTGGAACACAGAACGCTATTCAGAGTTGAGCTTTCTAAAGGAAACTTAGTACTGGTGAAGGCCAGACCAGACCAGTCGATACGCGATAGTATTGAACCCATATTAATACGATATGACATGGAATACTCTAACGTCGTTGTACACTTGGTGGGCTGTGAAGTACCTTTGGACAGCGGTATTCCAGTAGCCTCGATCGAACATCAATGTGTTGTCATAGAAACCAATGATCAGCTGACTGGCAATAACAATGGCCCACCAAAGATCAACATCAAGCCTCCAGTGGGGTTCAGTTCTCCTCGGCGCAGTAGCAGGCGAGGTAGCAGCATCGATGACTCGATCTTCGAAGATATCATACGCGGACGGAAACAGTCGCTAGGCAACGGTTACTTTGACGACGCAGGTATCTGGATACCCGGATTAAAGCCGTTTCGAAGCCAAGAGTCCTTGAATGATGATAGTTTTGGTAGGAGCTTTCTTCGAGGTCCAGGGTTGTTCGGCAGGAAGAGGAAAGAATCCAACGAGAAGTCTTTGAACAAGTCAGTCCGTGAGGGAAAGCAGGCAAATATCAAGAATAATTTAGAAGTTACAGAGTTATTAGACCTCTTAAGCCGCGCCCAAGGGAACAGAATGGACGACCAAAGAGGGGAACTCGGTAAACACAGCTTTGAATTACCTGATTTCTTGCGTTTACCGCAAGCTGGACCAACGAGACAAACAGAGAACAAAACTGCCCCACCCCCACCCCCACCACCACCTGTAGGATCATCGTTACGTCATACCACAGGGAGCCTGAAACTGAAGGGTGAAACACGACCCGTTGTTAGAAAGGCTTTATCGTCTCCATCTAACGGTAAAGACGACTTAATGTCTGAACTAGCAGACAAGCTACGACGTAGATCGACATCAGAGACCATGTCGATACCCGAGACTCGTGAGACTGAGGACAGCGTTGAGGGTCTGGTGAAGCGATCTGACTCAACCTCTAGTAAGGAACGATCTTATTCCCCCTGGGAACCCAGGTATCCTAGTGAACATTACCGACGGATCAATATAGTCCGACCCAAGACCTGTACTGACGGTGCTGTATTCACGGTCGAGGCAGTAACGCCCGTTCGATTGGACAGGGCGTTGAGTCCATCTGGAGTACCTATATCGCACTCTGAGAGTATGCCCGATGTGGTACAGACACGTACACGCGGTACCCAACCATTAACTGTGAATTCTATACGTGGGTTACCTACGTCTACTGGTAACGTCAATCGAACAGACGAACAACATGAACCAGAGAAAATCGTAAGAGTGGTCCAAGCTTTTCCAGTTCAGAAATACCAAACGTACGCAGCCAAGCCCAGAACGCTATCATCGTCCAGCGCGCCTGACTATTCACGCAACATGCCTTACGTTTACGAAGCAACGCCGAGTGAAAAACGAGAGAAATTGAAATCATCTTCCTTGAAAAGACGCCAAAGTGATGGCACAACGACAGGCACTAAAGGGAATCTTTCTCCGTTTCACTTCCCTCAACTTAACGCCAGAAAAACAGAAATATTTGTACCAGCGACTCCTGGCATCAAGCCCTATCGTATTATAAGTTCAGAATCGAAGCCACGGCCCAAACCTATCACACACTCTGCAGAGTTAATGGCAGGTCTTGAGGAAGATAGTAACGTAGTGGTAGATGATGTACCTCCCATTGTGCCACCGCCTCCACCTGAACTGATACACCCTTCCACCACAGCACCTAGGATAACATCTCCTGTAGTGTCTGATAGGAAGATCACTAGTCCCCTACCCCTACCCCCTTCACCAGTACCTGAAAACGTCGTAGACTTGGACATCGCTAACTTCCCTCCGCCTACTCCGCTCTATGATGCCGATTCAAAGAAAGGGGTCGATTCTACACCCATTGCCACACCCAACTTCAATCTTAGCAACGATATGACAATCACACCCGCGACTAATGACAAGACTGTTGTTTTTGATTCACCTGATGATGGAACGCCTTACGCACCACCGAAAGATTCTAGAAGAGATAATCAGAGACTTGGTTCCAGACTCTTTGATGAATCGCAGGCGTCAAGTTCGAGGAAGCCTGTGAAAGAATTTCCTAAACTTGATCCTTACGTAACGTATGAGAGCGATGACATGAGAATCACCTTCGTTTAG

Transcript

gene19252.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14924	Regulator of G-protein signaling 12 OS=Homo sapiens OX=9606 GN=RGS12 PE=1 SV=1
Q8CGE9	Regulator of G-protein signaling 12 OS=Mus musculus OX=10090 GN=Rgs12 PE=1 SV=2
O08774	Regulator of G-protein signaling 12 OS=Rattus norvegicus OX=10116 GN=Rgs12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002588 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan
PF02196 all species →	RBD	Raf-like Ras-binding domain	Domain	Interproscan
PF02188 all species →	GoLoco	GoLoco motif	Motif	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR003116 all species →	Domain	Raf-like Ras-binding	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan
IPR003109 all species →	Conserved_site	GoLoco motif	Interproscan
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR046995 all species →	Family	Regulator of G-protein signaling 10/12/14-like	Interproscan
IPR024066 all species →	Homologous_superfamily	RGS, subdomain 1/3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45945 all species →	REGULATOR OF G-PROTEIN SIGNALING LOCO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030695 all species →	Molecular Function	GTPase regulator activity	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008277 all species →	Biological Process	regulation of G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene19252.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.