Gene detail

Detailed information of gene19256.t1 in Actinoscyphia liui

Genomic Location: chr5:29974594...29997259
NR annotation: XP_020908514.1, nucleolysin TIAR isoform X2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene19256.t1

ATGGAGGCTAACTACGAAGATGAGAATAAAAGCCTCTATGTTGGAAACCTCGAAAGTTCATGTACAGAGGAACTGATCAAGTCGATATTTGAGGGGATCCATCCAGTGGCAAGATGCAAAATGTATTGTACGACTGGAAAGGATCCCTATTGTTTTGTAGAGTTTAGAACGAGGTCCGATGCTGCAGAAGCACTCTGTCGAATGAATAACAGGGTAATAATGGGAAAGAATATAAAAGTGAATTGGGCCACTAACAGTCAAGGAATGAAGAGAGGAGACACTAACAACCATCACCACATATTCGTGGGTGATCTTGCTGAAGATATCGATGATGCTGCTTTACGGAAGGCTTTTGAACCGTTTGGGTCAATATCAGAAGCACGGGTAGTTAAAGATCCAGCCAATAAAAACAAGTCGAAAGGGTTCGGATTTGTTGCCTTTCACAAAAAAGAGGAAGCTACAAAGGCAATCAATGACATGAGTGGGGCTGAAATAATGGGTAAATCAATTAGAACAAACTGGGCTTCAAGGAAAAACAACCCAGTACAGAGTAAGCCTTTAATTTTTGACGAAGTCTTTTGTAGATCTTCACAAATGAACACAACAATTTATGTGGGAAATCTACCTCCTGATACTAAAGACTATGAACTTCATCAGTTGTTCTCAAAATATGGCACAATAGTTGAAACCAAATTATTTGCTGATAAGGGCTTTGCATTTGTTAAATTTAGCAATCATACTGAAGCAACTCACGGAATAGTAAGAACACATAACCAAATAACATTAGGAGATCCTAATAATCCATATTTACTAAGGTGCTCTTGGGGCAAAGAAACACCAGACATGGTGAATTATCAACAGACTGGAGGAGCGTGGCAGCAACAGTACTATGCACCATTTTACTATCAACAAAGCCAAACTCAGCAACAACAAATGCAGCAACATTCGCATCAACAACAACCTCAACAACAGTACATGCAATACCCGTATGCAATGTTTTATCAGCAAGCAGGGGCTGCTGCTGCTGCCTATCCATCTGGCCAGGGTATGGCGATGTATCCTGTACACAATTATGCAGGTTCTCAGATGACTTCTTCAAATACGTCAGGAATTCAAACTCAAACCCAATCCCCCCAGGTTATGGGTATGCAGGCCAGTGCCATGGTAACTCCTCAGGGATCCCCTCCACAGTCCTCTTATGCCATGCAGCCGGCTGCTGGCTACCACGCCCAGTAGAATAATGGATATAACTTCCAGCAACAATAATAGTTGACGTGGACATCTTTACTACTGCTCTGTGGTCACTCAAGTTAGATAGAAAATAGAAAACACTAACTATAATGCTGTGTAATATGCTACAAACCCTTTTTTTCTCTCACTGATTTGTTGTCTGGATATTGGAAAGTAGAGATGGATTGGAAATTCATTTTTCACTGATTTGTTGTCTGGATATTGGAAAGTAGAGATGGATTGGAAATTCATTTTTCACTGATTTGTTGTCTGGATATTGGAAAGTAGAGATGGATTGGAAATTCATTTTTCACTGATTTGTTGTCTGGATATTGGAAAGTAGAGATGGATTGGAAAGTCATTTCTCACTGATTTGTTGTCTGGATATTGGAAAGTAGAGATGGATTGGAAAGTCATTTCTCACTGATTTGTTGTCTGGATATTGGAAAGTAGAGATGGATTGGAAATTCATTTTTCACTGATTTGTTGTCTGGATATTGGAAAGTAGAGATGGATTGGAAAGTCATTTCTCACTGATTTGTTGTCTGGATATTGGAAAGTAGAGATGGATTGGAAAGTAATTTTTCACTGAAAATGACACAATTGTCTTGGCGGTGTTAGCAAACTAAATGTAGTTTTAGAAATCAGTCGAGATATTATCCTTAGTTGATTCAGAGCAATGTAGTAAAATGTATACACAGAGTAAACTATCAAAGATGTTTTAATTAACATCCATAAAAATACATAAACAGATGTAAAAAAGCCACATTGGCTCAAGCAAAATGAGCCAAGTATTAAAAGCAATGAATCCCATAAGACAACCAAAAATCTATCAATGTTGAACCCCTAACTGTTGAAAAAGTAGCGTTGTGTAAATGTAGGAATCGTGATTTATGTCAGCAATGCCGTGCTTTCCACAGGCAGCCAAAGGAATTTAGTACAAAAATCAAGCAAATTTTTGCCACCATGTACAGTTTCACAGAACTATTAACTATATATTTTATATTTATTATCTACCATGACTGATGTGGTACAAACACCGAGTCTGCAATTCTTCAAAACGTCGTCTATTTTTCACTGTTCTATGTTGACGATTTTCTAATATTTATGAACCAAATTGAACTTTTTCAACACAGAATGGTTCTCATTTCTCTACACTCTCTGTACTTTGCTGTCTGTCTGTCTGTCACACTGTCATGTCTTTCTGTGAATGTGAATCACCCAGTAAGATGAATAATCGTCTTACAACAAGCTGTCTCGTTCAAGCTTATTTGTGTTTGCGATGCTACAGACAAAGGGAATAAAACAAGAGAATTTTTAAATGG

Protein

Uniprot

Uniprot term	Description
Q01085	Nucleolysin TIAR OS=Homo sapiens OX=9606 GN=TIAL1 PE=1 SV=1
P52912	Cytotoxic granule associated RNA binding protein TIA1 OS=Mus musculus OX=10090 GN=Tia1 PE=1 SV=1
P70318	Nucleolysin TIAR OS=Mus musculus OX=10090 GN=Tial1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13201	TIA1, TIAL1; nucleolysin TIA-1/TIAR	-	Spliceosome	ko03041	deepkoala