Gene detail

Detailed information of gene19291.t1 in Actinoscyphia liui

Genomic Location: chr5:30406919...30442959
NR annotation: XP_020894877.1, LOW QUALITY PROTEIN: sec1 family domain-containing protein 1-like [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene19291.t1

ATGGCGGCCAGCATGAGATCAAGACAAATCGATGCTTTGAAACGTATGCTCAACTTAAATCAACCTTTGAGTAAATCTGTTGCTGTGGAGCCAGCATGGAAGGTTTTGATCTATGATCGTTTTGGGCAGGACATCATATCACCATTGCTCACTGTCAAAGAACTAAGGGATTTGGGGGTCACTTTGCATCTGCTCCTACACACTGATAGAGATGCTATCCCAGAAGTCCCTGCAGTTTACTTTGTCATGCCAACAGAAGAAAATGTGAAGAGAATATGTCAGGACTGTAAAAACCAGCTCTACGAGTCATACTATCTAAACTTCATCAGTGCTATATCAAGACATAGACTTGAAGAACTTGCAGCTGCTGCTGTTCAAACAAATTGTGTACCACAAATATCCAAGGTATATGACCAATACCTAAATTTCATTTCACTGGAAGATGAAATGTTCACCACAAGATTTCAAGATAGGGATTCCCTGTCATATTATGCCATCAACAGACCAGATGCTAAGGACACAGATATAGAAATTCTAAGAGATGCTCTTGTGGATAGTTTATTTTGTCTGTTAGCATCATTAGGAACTGTTCCAATCATAAGATGTCCAAAGGGTAATGCAGCACAAATGGTTGCACAGAGCCTTGATAAAAAGCTCAGAGAAAACTTAAGGGACTCAAGGAATAGTTTGTTTACTACAGACATTCCATCAGGACAGATAAGTTTTCAGAGGCCAGTGCTTGTTTTATTGGATCGTAACATGGATCTGTGTACACCTTTACACCACACATGGACATACCAGGCTCTTGCTCATGATGTTTTGGAGCTGCATTTAAATAGAGTGACTGTCAAGGAAAGCCCACCCAATGAAGAAAATCCAGACATGCACCACAGGCAACCCATCCAAATGAAAGTCAAAACCTATGATCTACATTCAACAGATAAATTCTGGAACTCACATAAGGGCAGTCCATTTCCAACAGTTGCCGAGTCCATTCAGAAAGAGCTAGATGAATATCGTGCCTCAGAAGAAGAAGTAAAACGATTAAAGAATGTCATGGGTATGGATTCCAATGAAGAAGTTGTGACAGAATTCTTAAGTGACAGCACAGCAAAACTTACTTCAGCAGTCAGCTCATTGCCACAACTTCTTGAAAAGAAAAAGCTCATTGATATGCATACCAACATTGCAACAGCACTTTTAGAGCACATTAAGAAGCGAAAGTTAGACATCTATTTTGAAACAGAAGAAAAGATCATGAGCAAAACCACTTTAGACAAATCTATCTTAGAGATCATTCAAGACCCTGATGCTGGTACACCGGAGGATAAGCTAAGACTGTTCATTATTTATTATGTGTCTGGACCTGCAATGTCTCCTGCTGAGTTTGACCAGTATGCATCAGCACTACTAGAATGTGGTGTCGAGTCTGCATCACTAAGATATATTAAGACATGGAAAGCTTTTACTAAGATTACTACAGTGCCTCTGCAGTCTGGTGGTGGAGGCCAGAACACGTACAGTGCAATGTTCTCACGGATTATGAGTTCAGGATCTCAGTTTGTAATGGAAGGTGTCAAGAACCTTGTGGTTGGGAACAAGAATTTACCAGTGACACGTATGGTAGATGCTATAATGGACAACAAATCCAGCCCTGAAGTGGATGAATTTTGCTATTTTGATCCTAAAATGCTTCGTGTCACAGACAGCACTTCAATTCCACGAAATAAAACACCATTTCAAGAGGCTATAGTATTCGTAGTTGGTGGAGGAAACTTCATTGAATATCAGAATTTGATGGACTATTCCAAGAGAAACTCTGGAACTAAAAAGATTCTATATGGAGCAAGTGAAATTTTAAATGCAGCACAATTCTTAAAGCAGCTAGCTCGTCTTGGTACTGAAGCAGCTTCATAGGATTCTCTTAAAACAAAACAAATAGAGAAGAAGAATGGGCTGGAAATCATTAACATTATTGAAGTATCAAAACTAATGTCATTTTAAAATGTTTGTTAATTAACTAATTAGTTCAATGATGTAGTCGTTATGTCTCAATCAATTCCAAAGGCACCCATGCACCGTACAGGCATTTGTAGGGATTTGGATCAAATTTCTGCCCGGGGGTGGGGCATTTGCTTTTATAAAATTACAGTTGATATTCTATCAACAATACTATAAATTCTTTCGTTGTTTGTTTTCAACGTTTGATAATAAGAAAACATTTGAAAAACACTATTCGTAGACGTACTACTATGTTCAATTCAATAAAAGTGAAAATATGGCACACGATTTCGACAATTAACAAAAATACAAATGCCCAGGGGGACATGGGCTCGCTTGGAATTGATATTACCCTACAAAAACCATTTTTATTACCCTACAAAAACCATTTTTAAAGTGTCAGACTTGTTATCAAATGATAGGCTAAGTCCCCAGCGCCAAAATCCTAACGAATGGAGACTGGACAATAGATATCAATTGTATACATAATTAATTTATTATATGCTCACTCACTAGGGAATGCTGTAAAGTTGTACAACCAAAAATATCAAATATACCAGGTGGAATGTGTTCCTTTTCAAATCAACACAAAATTGTTTAGTGAATAAAGAATTATAGTAGTAATACCATGATCGCCTCGGTTTCTTTTGTTCTTCCAGAGACATACAAATCACTAAATCTCCCTTTTCAAACTTTCTGTCCGGGAAATTTAGTAAGACATAGATGGCATGTCTCCCTTCCGGGTTGGATCAA

Protein

Uniprot

Uniprot term	Description
Q8BRF7	Sec1 family domain-containing protein 1 OS=Mus musculus OX=10090 GN=Scfd1 PE=1 SV=1
Q62991	Sec1 family domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Scfd1 PE=1 SV=1
Q8WVM8	Sec1 family domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SCFD1 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00995	Sec1	Sec1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001619	Family	Sec1-like protein	Interproscan
IPR036045	Homologous_superfamily	Sec1-like superfamily	Interproscan
IPR043127	Homologous_superfamily	Sec1-like, domain 3a	Interproscan
IPR027482	Homologous_superfamily	Sec1-like, domain 2	Interproscan
IPR043154	Homologous_superfamily	Sec1-like, domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11679	VESICLE PROTEIN SORTING-ASSOCIATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19998	SCFD1, SLY1; sec1 family domain-containing protein 1	-	Membrane trafficking	ko04131	deepkoala