Gene detail

Detailed information of gene19336.t1 in Actinoscyphia liui

Genomic Location: chr5:30792529...30798967
NR annotation: XP_020909299.1, protein FAM161B [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene19336.t1

ATGGCGACCAGACATGGAATGACGGTTATAAAAAACCTGTGTTATACAGCACCTAGAAACCCTAATACTAAATTACCAGCCTCTGAAAATGAACGTACACTACAAAGTAGTTCTACTGAGGACACGAGTGATGCAGAAAAGCAGTCTTCATCTCGACATCGAGGAACGAAAATTCACACACCGAGAGCCATGTTGGAATCTTTGAAAGAACTCCAGACTGTAGACGAAAAAGATTTCTATAAGCATCTAGTAACTCTTAAAAAAGAACACAAGAAAGGTCTTAAACAAGTAGAGAAGAAGTACTACAGTGAATTACAGAAACAGCATCATGGATTTGATATAGACGAAGAAACTCGTATCACAGTGGATGGTGATAGCGCGATGAAGAATGTTCGAGATGACTACAATCCATTTACACAAGGCTATGAAGAACTATTAGAAAGTGATTTATTACCATCGACTGACCTAGTACGAGATATGTCGGTCAATGACCATCAAGAATACAAAGAGTATCAAGATTCAAGGCATAAAAGGCGATCACACAATGACCTTAGTAATGATAGCTGGTCAGAGGATGACATTGAAGCACCAAGAAAGCGAACTCATAGTAATGAAGGTCGTGTGTTGTATAAAGAGATGTTGCCCAATAGATCAAGTGCACTTGACACTGTAGAACATTTGTGGAAAGATTTCTCAGTTTATGATTATCCTTATGAGTCATCCAGTCCCCCTAAATCTGTTAACAAGCAGCCTGATACATGGTCACCTTGCATCACTATCCCCAAGCCCTTCTCCATGACCATGAGGGAGGCAAACAAATCCAGAGACAAGAAAACCAGGTCACAAAGAGTGCTAGAGGAAGAGTTAAAGAAGAAAAAAGAGAAGGAAGAAGCAGAGCTTCAGAAGAAGTTCCGTTCTCAACCTATTCCCGCTACAACATTTCTACCTCTTTATGATGAACTTAATCGTCAGAGTGAAGTTCGTCGACAACATGTGAGAGAAACGAGCAAAGCTCTGCTGAAATCCTCTGAGAAGCCATTTAGTTTCATTGAAAGAGAGGAACATAAACACGCACTTACACGATCCAAGTCTCTCAGCAGTCTAGCAGATTTGACTCCACAAAAAGAAAACAAACAATTCAAAGCCAACCCATTCCCATCCCGCTTATTTGATTTAACATTAGCAGATAAGTTGGCCGAGCAGGAAGAGTATCGAACCATTAAAGTTCGTATGAGAGCCCAAGAGACTCTGGCCAACTCTCGACTACCTGCCAATATGGAAGGGCGCGGTCGACAGTATACCATTGGCAAGCTAAGGAATAAAGCTATGAAAGAGAAGCAAAAGAAAGCTTTTATGACCAAAGATCACACTTTTAGGCCACAAATAAACCACGATATCCCAGACTTCGACCAGTTACAATATGAGTTTGATAAAGAATTGCGACTTAAAAAGAAGGAAAAAGAACCAACAGTTGTTGAACCGTTTCTACTGCGAACGGCAAGTCTCTCAGAAAGCCGCAAATCTCATCCCCTTACTACAAGATCAACTGATAGTTTAGTGTGGAAGTCTACAGGGAGGTCTGACAGTGGAGAACGGCCCTGTAGTGCCAGGCCAAGTAGTAGAGAACGTCCAGTGAATACAGCACGGTCCTGGTCATCCGACACTCTTCCATTTGGTACCACTGAATCTACGAGACTGAGGGAGGGTAAAATTCGACAAAGTCTAGAAGAACAACGAAGCAAAGACAAGCACGATGAAAAACAACAACGAAGAAAACATCGAAGATTCAAACAGCTTCGCCCTGAAGTGTCGCGTAAAGCAATGGCGAACGACAACTCCTGGCAGCTGAGAAGAACTGCTGATGTTAAAATCAAGAGTTTTAGGGAAGCAGACAAAGCTAGAAGAGAGGAATATTTGCGAGAACTCAACGAGATGAATAGTCGTGTTGATAAACGACCATTGTTGTTTGAGCGTCAGTCTCAGCTCAACGCCAAGAGAACCGCTGAACGCAAGTACGAAGACATCTTACGCAGTGCGGGCGTGGACGAGCAGATTGTCAGGAGCCTGGTAACCAGGGATGGCAAGATCATTGATGCCGAATCAGAGGACGATGAGGAAAGTGATGAAGATGACACTTACTCTAAACACTTCACACAGACTCGACAAGACTACAGTGACAACGATACAGATGAAGACATCGATTTATGA

Transcript

gene19336.t1

TCGACATGGCGACCAGACATGGAATGACGGTTATAAAAAACCTGTGTTATACAGCACCTAGAAACCCTAATACTAAATTACCAGCCTCTGAAAATGAACGTACACTACAAAGTAGTTCTACTGAGGACACGAGTGATGCAGAAAAGCAGTCTTCATCTCGACATCGAGGAACGAAAATTCACACACCGAGAGCCATGTTGGAATCTTTGAAAGAACTCCAGACTGTAGACGAAAAAGATTTCTATAAGCATCTAGTAACTCTTAAAAAAGAACACAAGAAAGGTCTTAAACAAGTAGAGAAGAAGTACTACAGTGAATTACAGAAACAGCATCATGGATTTGATATAGACGAAGAAACTCGTATCACAGTGGATGGTGATAGCGCGATGAAGAATGTTCGAGATGACTACAATCCATTTACACAAGGCTATGAAGAACTATTAGAAAGTGATTTATTACCATCGACTGACCTAGTACGAGATATGTCGGTCAATGACCATCAAGAATACAAAGAGTATCAAGATTCAAGGCATAAAAGGCGATCACACAATGACCTTAGTAATGATAGCTGGTCAGAGGATGACATTGAAGCACCAAGAAAGCGAACTCATAGTAATGAAGGTCGTGTGTTGTATAAAGAGATGTTGCCCAATAGATCAAGTGCACTTGACACTGTAGAACATTTGTGGAAAGATTTCTCAGTTTATGATTATCCTTATGAGTCATCCAGTCCCCCTAAATCTGTTAACAAGCAGCCTGATACATGGTCACCTTGCATCACTATCCCCAAGCCCTTCTCCATGACCATGAGGGAGGCAAACAAATCCAGAGACAAGAAAACCAGGTCACAAAGAGTGCTAGAGGAAGAGTTAAAGAAGAAAAAAGAGAAGGAAGAAGCAGAGCTTCAGAAGAAGTTCCGTTCTCAACCTATTCCCGCTACAACATTTCTACCTCTTTATGATGAACTTAATCGTCAGAGTGAAGTTCGTCGACAACATGTGAGAGAAACGAGCAAAGCTCTGCTGAAATCCTCTGAGAAGCCATTTAGTTTCATTGAAAGAGAGGAACATAAACACGCACTTACACGATCCAAGTCTCTCAGCAGTCTAGCAGATTTGACTCCACAAAAAGAAAACAAACAATTCAAAGCCAACCCATTCCCATCCCGCTTATTTGATTTAACATTAGCAGATAAGTTGGCCGAGCAGGAAGAGTATCGAACCATTAAAGTTCGTATGAGAGCCCAAGAGACTCTGGCCAACTCTCGACTACCTGCCAATATGGAAGGGCGCGGTCGACAGTATACCATTGGCAAGCTAAGGAATAAAGCTATGAAAGAGAAGCAAAAGAAAGCTTTTATGACCAAAGATCACACTTTTAGGCCACAAATAAACCACGATATCCCAGACTTCGACCAGTTACAATATGAGTTTGATAAAGAATTGCGACTTAAAAAGAAGGAAAAAGAACCAACAGTTGTTGAACCGTTTCTACTGCGAACGGCAAGTCTCTCAGAAAGCCGCAAATCTCATCCCCTTACTACAAGATCAACTGATAGTTTAGTGTGGAAGTCTACAGGGAGGTCTGACAGTGGAGAACGGCCCTGTAGTGCCAGGCCAAGTAGTAGAGAACGTCCAGTGAATACAGCACGGTCCTGGTCATCCGACACTCTTCCATTTGGTACCACTGAATCTACGAGACTGAGGGAGGGTAAAATTCGACAAAGTCTAGAAGAACAACGAAGCAAAGACAAGCACGATGAAAAACAACAACGAAGAAAACATCGAAGATTCAAACAGCTTCGCCCTGAAGTGTCGCGTAAAGCAATGGCGAACGACAACTCCTGGCAGCTGAGAAGAACTGCTGATGTTAAAATCAAGAGTTTTAGGGAAGCAGACAAAGCTAGAAGAGAGGAATATTTGCGAGAACTCAACGAGATGAATAGTCGTGTTGATAAACGACCATTGTTGTTTGAGCGTCAGTCTCAGCTCAACGCCAAGAGAACCGCTGAACGCAAGTACGAAGACATCTTACGCAGTGCGGGCGTGGACGAGCAGATTGTCAGGAGCCTGGTAACCAGGGATGGCAAGATCATTGATGCCGAATCAGAGGACGATGAGGAAAGTGATGAAGATGACACTTACTCTAAACACTTCACACAGACTCGACAAGACTACAGTGACAACGATACAGATGAAGACATCGATTTATGACCCTCCTGAATTCCTAGTTTATTTAGTCTAGATATATTTATAACTTGTAGATAGAAACCATTTATTAATCTTGCAGCCATGTTTTAAACCGAGAAATGACTCTCTTGTCCTCCCTTCACACCACTATTCCAACGAGCTTGTGGAACAACTTGTTAGGTTATGTACTGTGTAAATAAATGTGATTCAGTCAATAAACCAAAGTATACTCTCTTTATAGCGACTGTTCACGACTTCATGTGCCAACCAAAGATCGACTGATCGACTGTTGTAACAAAGCAACTTGTGAAAAGATTTTGTGAAAATGGTTGGCACATTAACATTACAATGTATTTGACAGTATTATAAATTTACATTTATTCATTCTTATCGTATGTTCTTAGTTGTGTTCGGTATTCATTGGCCGAATCCGGATTTGAATTCCCGAATCCAGATTTCATGGATTCAGAGACATCAAAGAAACCGGTGAATCCACTATCAAAAGAATTGAAAAATCTGTTTTTGGATTCGAGAATCCGGATTCGGATCCAACAAAAGAAACGTACCCTTGGTTACGCATATGTCAAGTATGGACTCACAATGAACGTTCGATGTTGTTGACGACCAAAACTAAGACGTTATTTGGGTTTTTATAATATCTGTACAGTAGTCTAACTGACCCTTCACCGATCTCTTCATTCTGTATACTGTAGTATGAAACAAGAGTCAATAACCTACTAGTTTCCATGGCAACAATGTTTTATCGTTCTTCATCTATGAATGAATGAATAACTATCTGGGCTTCGAAATTAAGAGTAATACTGCACCGGATCGGAACAAGGTTCCTGATTCGCTTTCAAGAACGCAATAGATGTTATTCTCTGTCTGATTGTCTCGTTCTATTATTTGTATTGTTTTTGTTGTTTTTCAAATCCAATTGGCTGAGGAGTTTCGATCGGTGTAGGCTGGCTCAAAGTTAAACCAACAAACAGGAATGGAGGATTTACCATTCATGATTATATGCTGATTTGTTCTCTATTCAATATACTTCATCATGGTCATCTATAGAGCAGATTTCACACGGAATTTCGAACTGTTTTTATACACAACACCGAGCTGACACTCTTTCTTCACAGTCATTCGAAATCTGCTCTATGGCAGAAACATGAAAAATGAAACCTTCATTCCTACCCTCTCTAACAGAGGAGTCTTTTCTGCATGATTTATGTGTGGATGTTGGTATAATCAAGAATAAAATGTTGTGGTTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AY14	Protein FAM161A OS=Rattus norvegicus OX=10116 GN=Fam161a PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007403 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10595 all species →	FAM161A_B	Protein FAM161A/B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051655 all species →	Family	FAM161	Interproscan
IPR019579 all species →	Family	Protein FAM161A/B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21501 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0044782 all species →	Biological Process	cilium organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16772	FAM161A; protein FAM161A	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.