Gene detail

Detailed information of gene19390.t1 in Actinoscyphia liui

Genomic Location: chr5:31258786...31265035
NR annotation: XP_020909206.1, WASH complex subunit 1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene19390.t1

ATGCCTGTGCAAGTTTACAATGTCCCGATTATTTTACCGAGTTTACGCAAAGAGGAGTCAATTAATCAAATTATTGACTCTCTGGAGCATCTAGAAAAGATTGCAGGAGATATATTTTCCAAAATCAGCTCAAGGGTGAGCGAAAACCGCGAGAGATTGAGTTCCTTGAATCAAAGAGTCGACGTTGCACAAGCAAAAATTGACAGAATAAAAGGGACGAAAAAGGCTACAAGAGTGTTTTCCAGCGCTAAATACCCAGCTCCACCGAAGCTTGAACCTTACAAGACTCTTTACTCGGCAGAGAATGATCTCCAGGAAGTCAAACGACAAAGTTATCATCTAAAATCGAAGTTCACTGCAGTGGATGAGAAAATTATGAAAGAGAAGCTTCAATTTTTCAATGTTCACTTGGATCCCAAGAACACTAAAGAAGGAAACAAAGAAGAAGGCTTGGGTGCTCTGCCTAAAAACCTTCATTCTATTAGCTCTCTTTTGCTGTTCAACACCACTGAAAATCCTTACAAGAAGTATGTGATGTTAGATCCACTGTCTGGTGCTGTTACCAAGACAAGAAGTAATATTGAGGAAGAAAAGGGGATTGGTGCTGCTCCTATATCAATTACTCAGGGAGAGGAGATAGACAGAATGGCTGCCACAAACTACTTTTATGTACCCAACCTTGGTGCGGTACCAGAGATAGATGTACCAGTATATTTACCAGATTTACCTGGCATCGCTGATGACCTGGCCTATAGTGCCGAGTTGGGTCCATCTATTGCACCATCTGTTCCACAAGGACTAGACTTACCAGAAATACCTGAAGTAGAGGCTCCAAAGATAGAACAAGGATCTGCACCCCCACCCCCACCAGCTGTTGATGGCCCACCGCCACCGCCTCCTCCCCCACCACCAGGGGGTGCTCCACCACCCCCACCACCTCCTCCACCCCCTCCCCCACCTGAAGGGGTTCCAGCTGCCCCACCACCACCCCCACCACCAGCAGGTGCCCCAGCCAGTGCCCCTAAATCAGTGCCTACAGTGGTCATAGATGATGGAAGAGCAAATCTTATGGATGCCATCCGGAAAAGTGGAGGCAAAAGTGGTACAACACTTAGAAGCGCTAAAGAAAGAAAACTGCAAAAGAAAGCTGAGAAAGAACAAGCAGCGATTTCTACCTCCTCCGGTGGTGATTTCATGGGAGATCTCTTTGCAAAGATTTCCATGAGAAGAAAAGGGATTTCTGGTTCAAAAGGAGAGAGTTCTAGTAGCGCAGGAGGAAGCACAGCTGATACTGGTGGTGGCTCTGCAATGGACAAAATCTCTGCAATGATTCCCGCCCCGCCTAAAGCTAGTCGAGGGTCATCATTTAGATCTCATGACGGTGATGATTGGGACACATAGTTGTTTTGTAAAGATATTTCTTATAACATTTGTATATGAAAATTTAATAATATTATACTGTAAAACCTTGAAAAGAAGCCCAATGGCTTGTTTTCTATTTAGGACCCTTGGGTGGGCTTCATTTCGAGATGGGCTTCTTTTTGAGATTAATTTTGTTCAAGAGGGGGGGCTTTTTTTTTTCAAGATGGGCTTCTTCTCGAGATTAAGCCCACTGGGCTTCTTTTCGAGGTTTTATGGTATCAGTATTCATAATTTCCTGGAAAGAAAATATTAAAAAAAAATTATAATTTCCTGAAAAAAATATTAGAAAATTTGGAAATTTTAGAAAGTGTACTGAAGCTGAATTCCATATTAATCATGAAATAAAAAAGCAAGAATCGAGTTATGAATAAAAAATTAGAACACATGACCTGCCTTCTGAATGTCCTCTCAAAATAATGATATTCTACTTTCAAGTGCTATTCAGCCTGTAGCATTTTCTTTTCAAAACAAAAAACTTTTTTGGATGGAAGTCATGTGAATTCACCACATGATGTTGGTTACAAATGTTACCTTTCAAGATTCAGGTTTAAGTTCTCTTCATTTGAAAACAATTTTTTTAAAGTGCTCAGAAAAAAAAAAAAAGTTGTATAAAATTTCCATAAGACATAACATTGTGGAAAACTGCACTTGTTCTTGTCGCTCTATTCAGTTGGTAGGTAAAGAGCTGGGTCTCCAGGGCAACAAAACTGATTTTAAGAAAACATGTAATTTTCAATAATTAAAAGGCTAAGATTGATAGAAATAGCCTGTCACATGAATGCATAAAGTTGAAATGGAAGAGTTTTGTGCCAATTGTTATGAGTTGACTGAAAAAGAAATGCTGGCCTGTTAGGCTAGTGACACCACTTGCCATGCTTCATTATTGTAATGTCTAATGATTGCACAACATGAGAACACTACTTACATGTCAAATATTGACTAAAATCTTCCCGAGTTATTAAACCTCTTTTGACATAGTTTAAATTGAACTAGCTGGTATTTACTCTAATAGTCCATCATTTACACTCTGACAGATTAACTTTATGAAATTTCAATTGAACAAGAGTAAATTTAATGTGATCTAGAGTAAAACAAAGGATATTTAGACAAGAAGAGAATACAATCTCGACATGATTACGGCAGTACGTCATCGGTACATCTTGTTAAGGCCGATAAGCTGTCTGTCTAGGTTATTGTACATGGGATTACAGTGTACTATCGTTTGACATTCATATATCTCGTTGCAGTTGACGACAGGGTTCAAAACAGATCATATATGTCATACATACTGTTATGCTTAACAGACCGCGCCAGAACGACATGGTACAGTAATAAAACAATTAAAAGTTACAATTAAGAAATCCAACCGTTGGATTTGTTGGGTCCTTAAAATGACATGCTCAACTGGCTTGATGCTATTTGATCGGTCTGATCGTTAGACATTAGAACTATTTGAGCGTTCTACAGCTAGCAATGATAAAATTACAAGCAAAACACATGAAATTGGTTATTTGATGAGGATTTATTACACATACTAACCCTGTTGTTACAAGTTAGAATGACTAAAATCAATTTTCCTCTATATTTTACGACGCAGTCCATGTTTTTTTTTGTGAGTTTTTTGATTATGATCTTTGTGAAGAATGACCAACAGAAGATGCCAAACCTTGAGCTTGGAGAGCCCTGGCCACAGCTTGATCCTTGAAGATGGTAGGGTTTGAGAAGAGGCCACGGAGAGCGTTGAGCTCTTTAGTGAGATGATCAACTCTTGCATGAAGACGATCGTTCTCCTCTGTGAGCTCCTCGACTTTCATCAGTGTATCAACAAACTTTTGCTTGGTCTTGAATCGGCTTTTGCGGACAGCAACGTTATTTCTCTCGCGTTTCATGCGGTACTCATCGCTATGCTTCTCAGCTACTCGCTTGGTGGAGCTATGTCTTCGCGAGGTGCGCGAAGAGGCGGCTTTCAGCTGGGCAGATGGTTGTTTCTTCTGCTGACTTTCCTTCTGTACCATTGTAGGTTTACCAATACCAAAGGACATGATCTGGTCATTATCTCTAGGTTCTGACTTTACAACTACATTGGAGAATCTACAATCTTTTCCTACTTCTACTGGTTTATCGTGATTGCTAGGGGGTAGGTACTTGCACAGGTCATCAGGACTTGTGCTTAGTGCGGCTGGATCCAGGTATGTTGTTAAATCGATCGAGAAGTCACTAATGCAAGAATCCTCCAGGCTTGATGTTGGAGATGGGATGTCATCAAACAAATCCGAGCAAGGTGAACTCGCTGCAGACCATTCGCCTGGCTCGTACAGATCTAGAACGTCCATGGCTTCGTTGCATATCGGGCTTAGATTATACGAATAATCCTGGTCGAGCTTCAGGTCCAGTCCGGTAGGGAAAAGGGGAGGGATATCGAAATCCTTGAAAGGTGGAATTTTGGCGACTTGTCCGGTTAACGTTGAAAATAAAAGGGTAAAAACCCCTCGACTCGTTCCTTGTTGTAGCGCGCTTTCGTGAAGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IG59	WASH complex subunit 1 OS=Danio rerio OX=7955 GN=washc1 PE=2 SV=2
B2RYF7	WASH complex subunit 1 OS=Rattus norvegicus OX=10116 GN=Washc1 PE=2 SV=1
Q8VDD8	WASH complex subunit 1 OS=Mus musculus OX=10090 GN=Washc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009146 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11945 all species →	WASH_WAHD	WAHD domain of WASH complex	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003124 all species →	Domain	WH2 domain	Interproscan
IPR028290 all species →	Family	WASH1	Interproscan
IPR021854 all species →	Domain	WASH1, WAHD domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23331 all species →	CXYORF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0034314 all species →	Biological Process	Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0043014 all species →	Molecular Function	alpha-tubulin binding	Interproscan
GO:0043015 all species →	Molecular Function	gamma-tubulin binding	Interproscan
GO:0055037 all species →	Cellular Component	recycling endosome	Interproscan
GO:0071203 all species →	Cellular Component	WASH complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18461	WASH1; WAS protein family homolog 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.