Gene detail

Detailed information of gene19444.t1 in Actinoscyphia liui

Genomic Location: chr5:31771116...31777436
NR annotation: XP_020913102.1, mitochondrial basic amino acids transporter [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene19444.t1

TTTCTGAGTACTACGATTGAATGCTTTCTCAAATACTGGTGTTTACCTAGAACTGCAAACCTCTAAACCAGCTGTAATCTATAGTGGTGGCACGATAGGATGGCTTACGATTTTTTCGCAGGATGTTTAGGAGGTCTGGCTGGAGTTGTCGTTGGCCATCCATTTGACACAGTTAAGGTTCGTTTACAAACCCAGTCTCGCCACTACAAAGGAGTCGCTGATTGTTTTATTACCATAATTCATAAAGAAGGATGGTTTGGACTCTACAAAGGGATGGCTTCTCCGATGGCTGGCTTAGCATTTATAAATGCTATTATATTTGGTGTGCAAGGAGAAACAGTGAGGCGATTCAAGCTAACTGGTGTAGAAGGTGAATGCTTGGCTGGTGCATTATCAGGAGCTGTTCAATCTGTGATATGTGGACCAATGGAACTAGCCAAGACAAGAGTACAAGTCCAAGGAATTGACAAGGCGTACCATCTCTTTTTTACTCATTTTGGCGAGGGTAGTAAAACTAATTACACTGGTTCATTCGATTGTATTACCAAGGTTTACCAAACAAAAGGCATCAGAGGGTGTTTCCATGGTTACGGAATTACGTTCTTAAGAGACACGCCAGCATTTGCTATATACTTTGGTTCCTTCTATACGCTGTGTGAATGGCTTACCCCTCCAGGTGGTTCTGTTCACCATCTCAGTACAGCCAGACTGTTAATTGCTGGCGGAGTTGGAGGTACTGTATCATGGATTGTATTGTACCCTATTGATGTAATCAAATCTAAATTTCAAGCTGATGGGGCTCTATCTATTACCAAGTACAGTGGTTATCTGGATTGTATCAAACAGACTTATGCTGTTGAAGGTCTACGTGGGTTTAGCCAAGGAATGTTTGCAACTATTCTTAGAGCTTTTCCAGTCAATGCTGCCACATTGACTGTGGTGACAATGACTTTAAGATTTGCCAGGAATCGAGAGATGCAGTTGGAATTGGCATGACTTTTATAATAACTCTAGTTTTAAATCATTTAACAAAATTACTGAATGAATGCAATTTCTTATGAATTATTGCTAAGCTGAGACTGCATCAGGTACGTTGGAAACAGTATTTTAGCACTAAGCTGACCAACCAGCGACTATACAAGCTTGTTAAGATGTCTTTTGCAGAACAACAATAATATTATTAATTTTGTATTGAGATATAGGGGCTGCAAATTATTCCAGTCTTATAGTAGATGGCAAACTTATCAGTGTCTTTAAATAGAGGCAGTGGTTACAATAATATTTTTTATATATCTGGTGTATTAAAAGATTTCCTTATCTAGAATTAATGTGGTTATCTGATATAGATTCGCCTTCATTTGCATAAACTTTAACTTCAATTTTCTCTGCAAAACTTACATAAATATTGGAGATTGTAGTAAAAATTGTGAAGCAAAGATTGGTCGTTTTTTAAGCCTACGGCAAGTATCTATATACCTGATACAACACGGACTTGAGTTTTATAAATAGCATATAAAGAATATTAATGAACATCGATCTTTATATAAAGAATAAGAATAATAATAACAACTTTATTGGACAGGGTAACACCGTTACCAAAAATGATAATTTTCAGGTGGCCCTCATATACTATAAATATCTATATATACAAATTATAAAAACTATATTATAAAATTGACTAGATATCATATATACTATAGAAAAATGGGTAAAGTAGGATTAAATATCTAATCAAAACTTTTGAAGATAAATATTAAAATGAATGTGATTAAGATAATGTTTTTTTAAATGTTCGATAGAGGAACTGTTTCTGATGTCTTGAGATATGGCGTTCCAGAGGGTGACTCCACAGTATTTGAATGTTCTTTGTCCCGAGTTAGTCTTGTATAATGGGATGGTCACGTTTCCTTTGGTCTTGCCAACGCGTTGTACGTTCACTTTTGTTGATGAAGTTGTGGTTTAGATAAGATTGTGCCAAACTGTTTATGACTTTATCGGGTATAAAGGACCATGCACGTGACACGTGTTGCTCTAATCGGACCAAAGGTTTATGAATTATTCATGAGTTTTTGAATAATAGTGCATATCTTTTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N8R3	Mitochondrial basic amino acids transporter OS=Homo sapiens OX=9606 GN=SLC25A29 PE=1 SV=2
Q08DK7	Mitochondrial basic amino acids transporter OS=Bos taurus OX=9913 GN=SLC25A29 PE=2 SV=1
Q8BL03	Mitochondrial basic amino acids transporter OS=Mus musculus OX=10090 GN=Slc25a29 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000470 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR050567 all species →	Family	Mitochondrial Carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45624 all species →	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005289 all species →	Molecular Function	high-affinity L-arginine transmembrane transporter activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:1990575 all species →	Biological Process	mitochondrial L-ornithine transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene19444.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.