Genomic Location: chr5:34607881...34647404
NR annotation: XP_031557799.1, nidogen-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families
| CDS |
| gene19711.t1 |
| Transcript |
| gene19711.t1 |
| Protein |
| gene19711.t1 |
| UniProt accession | Description |
|---|---|
| C0HL13 | Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1 |
| A1Z877 | Nidogen OS=Drosophila melanogaster OX=7227 GN=Ndg PE=1 SV=1 |
| P98157 | Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus OX=9031 GN=LRP1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003018 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12946 all species → | EGF_MSP1_1 | MSP1 EGF domain 1 | Domain | Interproscan |
| PF07474 all species → | G2F | G2F domain | Domain | Interproscan |
| PF00058 all species → | Ldl_recept_b | Low-density lipoprotein receptor repeat class B | Repeat | Interproscan |
| PF12947 all species → | EGF_3 | EGF domain | Domain | Interproscan |
| PF06119 all species → | NIDO | Nidogen-like | Family | Interproscan |
| PF07645 all species → | EGF_CA | Calcium-binding EGF domain | Domain | Interproscan |
| PF00754 all species → | F5_F8_type_C | F5/8 type C domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000033 all species → | Repeat | LDLR class B repeat | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR024730 all species → | Domain | Merozoite surface protein, EGF domain 1 | Interproscan |
| IPR000421 all species → | Domain | Coagulation factor 5/8 C-terminal domain | Interproscan |
| IPR018097 all species → | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR000152 all species → | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR009017 all species → | Homologous_superfamily | Green fluorescent protein | Interproscan |
| IPR011042 all species → | Homologous_superfamily | Six-bladed beta-propeller, TolB-like | Interproscan |
| IPR006605 all species → | Domain | G2 nidogen/fibulin G2F | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR009030 all species → | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR024731 all species → | Domain | EGF domain | Interproscan |
| IPR003886 all species → | Domain | NIDO domain | Interproscan |
| IPR002889 all species → | Domain | Carbohydrate-binding WSC | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR049883 all species → | Domain | NOTCH1 EGF-like calcium-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24039 all species → | FIBRILLIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0007160 all species → | Biological Process | cell-matrix adhesion | Interproscan |
gene19711.t1.
