Detailed information of gene19721.t1 in Actinoscyphia liui

Genomic Location: chr5:34778904...34788451
NR annotation: XP_020901911.1, pre-mRNA-processing factor 39 isoform X1 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q4KLU2Pre-mRNA-processing factor 39 OS=Xenopus laevis OX=8355 GN=prpf39 PE=2 SV=1
Q86UA1Pre-mRNA-processing factor 39 OS=Homo sapiens OX=9606 GN=PRPF39 PE=1 SV=3
Q8K2Z2Pre-mRNA-processing factor 39 OS=Mus musculus OX=10090 GN=Prpf39 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05843SufSuppressor of forked protein (Suf)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR008847DomainSuppressor of forkedInterproscan
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR17204PRE-MRNA PROCESSING PROTEIN PRP39-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0000243Cellular Componentcommitment complexInterproscan
GO:0000395Biological ProcessmRNA 5'-splice site recognitionInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0030627Molecular Functionpre-mRNA 5'-splice site bindingInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13217PRPF39, PRP39; pre-mRNA-processing factor 39-Spliceosomeko03041deepkoala

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