Gene detail

Detailed information of gene19776.t1 in Actinoscyphia liui

Genomic Location: chr5:35428154...35428531
NR annotation: CAB4038082.1, 39S ribosomal L30, mitochondrial [Paramuricea clavata]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D7N6	Large ribosomal subunit protein uL30m OS=Mus musculus OX=10090 GN=Mrpl30 PE=1 SV=1
P0C2C1	Large ribosomal subunit protein uL30m OS=Rattus norvegicus OX=10116 GN=Mrpl30 PE=1 SV=1
Q9X1J1	Large ribosomal subunit protein uL30 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=rpmD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010611 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00327 all species →	Ribosomal_L30	Ribosomal protein L30p/L7e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036919 all species →	Homologous_superfamily	Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily	Interproscan
IPR005996 all species →	Family	Large ribosomal subunit protein uL30, bacterial-type	Interproscan
IPR016082 all species →	Domain	Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15892 all species →	MITOCHONDRIAL RIBOSOMAL PROTEIN L30	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02907	RP-L30, MRPL30, rpmD; large subunit ribosomal protein L30	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.