Gene detail

Detailed information of gene20180.t1 in Actinoscyphia liui

Genomic Location: chr5:42394664...42405481
NR annotation: KXJ24804.1, Calmodulin [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene20180.t1

TGACGTCAAACCCTGTGATGAAAACATTTACCTGACGTTCTCGCCAGAATCTGCACGAAGCATGAGAGAGTAGGCCGGCAGATGTAGTGTCGCGTTTTGGAGATCATTTCTTCCTCCCAAAATGACTGACTTCGAGCTCACCGACGAACAGAAAAATGAGTTACAAGAGGCTTTCTCGCTCTTTGACAAAGATGGAAGTGGTACAATATCCAACGAAGAACTTGAAGTTGTTATGAAATCCTTAGGACAAAACCCTACCGACGAAGAGCTACAGAAAATGATCCAGGAGGTCGATGCAGACGGTAACGGTGAAGTCGACTTCGAGGAATTTTTAGTGATGATGAAAAATCAAATGAAAAATAGAGACTCTGATGCAGAAATCAGAGAAGCCTTCCGAGTCTTTGACAGAAATGGTGACGGCTCAATAACTCCAATGGAACTAAAAAGCGCCATGGCAAGTTTAGGGGAAAAACTGAGCGACGAGGAACTTACCGAGATGATGAAAGAAGCAGATCTTAATGGCGATGGTGTCATAAACTTTGAAGAATTTGTGCAGATGTTTATCAACATGGATAAAGGGGTGCAGGAACCTCCACGGTATCAGATGGCCAACTAAACATTGCAGACTTGGTTGTAACATTGCAGCATCCATTGGAGTTTTGAAGTCGCTTTGAAGTCGGTGCACGCTTGTCGAGTACTCCAGACATGCACCCATTGTAATATAGATTAGTAAATACACACACAGAAGGTTTTAAAGGCCATGTACATATACATAGAAGTGCGTTATGCTACATTCAAAGCACTTGGACTATATTATATATACAACAATGCATCGCAGTATACGTAACGCTATTTGAACAGCACAATGTTTGTGTATCCACGAGTTACAAAAGACATTTTAGTTGAACTTCTTTAATACGGACATTGAAAGACCAAAGACAACTGTCCGTAATATAGAGGTGTCTGTCCTATATAGAGGCGAACCTCCTTAATATGGACATCGAAGGGACAAAGTTGAATGGACATATATACAAAAGAGATAAATGTATTTTATAGAAATTTTGGTGCTAGCAAACGTACGTATTGAGATTCCTGCCGCTGAGACAAAGAGGCCGGGCAACTGGACCGTTATATTAAGGTGTCCGTATTATAGAGGTTTTCATTTATAAGAGGTTTTATAGATATTTCAGCAGTAAATACCATGAAAACCGTCCGTTATATTAAGGTGTCGGTATTATGGAGGTGTCTGTTATATATAGGTTTTCTCGATAACTGTCCGTTCTGTTAAAGGAGTCCGTAATACGTGTGCGTAAGACAAATCATTATTTATTTTTACTAGCAAGTCAATGCGTGAGAGGTTCTTCATACTTTTATTTGGTCCTAAGGCCATCACTACAACATTTTGCGTTGTACTAACGTAGCTGCTAATAATTAAATTATTTTATATATTATTTATATCGATCGATTTTTAAATTTCTGCGAAAAAAATTGTACATAGTTAACAAGATAACCGGTTTGGGAGTTTCCAACTCTTTTCATGAAGAGAATGTGAAGGATTATTTCAATTATTTCATACAAATATAGAGAGAGTACAAAATAAAGAGATGGTAACGTTTGTAAATACAGTTGGACGAGAAGAAATAGATTTTATTGGTCCAAGTGTAGATGTGTGATGATTGGCTGAAAAAAAGTATTTGTATTACTGATGTGATTGGCTAAACGAGGTTTCTTTGTTTGTGATTGGTCGACAAAACAATGTGTGGAATTTTTGCGGATTTGAATGGGGTCATCATAGGATTGGCTGACGTGACTAAGCAATGTGATTGGTCGAATTAAAGTGAATCTACATACGTGATTTGAAGGGACTGAGACTACTAAATCGGCTGCTACTAGAAACTGCCTAGTCTCCTGGTCACACAATCGGCGAGGTAGCGATTGCGTGACGAGGTTGCCAAGAAGACTACTGAACTGTCCGAAGAAATATAAATATTTATTTCCCTTTTTTGTTTCCCTCTAGCTTTGTTTAATTTTCACCATAGCATTTGATTCGTAGAGTTATTAATTACAATCCTTTTATTTACTATTGTAAATTCTAGCTTCTAGCATTTGATTCAAGTTGTGACGAGAGTAAATTAATTAGCCCATGGCTAAACTAATCAAATCCTGACAGAAACTAGCTAGCTAGCTCCATGGCTAGATCTTTTGTACAAAGACTTTGCTATAGGTTATAGGTTATGGAAAGATTAAAAAGCATAAGTTGACTTTAAAACAGATTTCTTGTGAGTGGAGAACTTTGTCACTTTTTTATTGTACACATACGTCATACCACTGTTAGTTTTGATTGGTTCCTACAGGGAAGCCACTTAAGTGTCAACGTGACAAAGTCTCATACGAAATCTGTTTTATATTTTACCGTGTTAGACTACTGAATAGAAAGGCGAGTAAAAAATTCAAAACC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P11121	Calmodulin OS=Pyuridae sp. OX=7734 PE=1 SV=2
Q9HFY6	Calmodulin OS=Blastocladiella emersonii OX=4808 GN=CMD1 PE=3 SV=3
P18061	Calmodulin OS=Trypanosoma cruzi OX=5693 GN=CALA2 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000122 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR050145 all species →	Family	Calmodulin and Centrin Calcium-Binding Families	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23050 all species →	CALCIUM BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0030234 all species →	Molecular Function	enzyme regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02183	CALM; calmodulin	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.