Gene detail

Detailed information of gene20313.t1 in Actinoscyphia liui

Genomic Location: chr5:44577330...44599640
NR annotation: XP_031561045.1, uncharacterized protein LOC116297048 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene20313.t1

ATGGTAGCTCACAGAGTTTGTAGCATTGGGCCGTTGTCGGTCGCTGCTATAGTACTGTTAGGTGCGGTAGCGGTCAAAAGTGCAGTGTTCAACAGCGCTGCAACCGTGAAAACAGCACGATGTTTTGCAAACTGCTTGTCGCAGGTCAAGAATTCGAAGCCGGATCTTGGTTGTCATGGAGATGAATGCAAAAAGTGTGTTGCACCTTGCAAAGTACCGTTCACTACAATACAGAAATGCAAGTCAATTTGTAAAAAATCCAAAATCTGCGAATCTAGTTGCCAGTTTCTCCTCGACTTGAAGAGCAAACCCAACGTGCAAAACGACATTGTTACAGAGAAACCAGGATCTCCGGTGGCAGTTGCTAAAACTGTTACAAATCTCACGTTGTCATGGAAACCAGCCAAAGCAAGTGAAGGGAATGTGGTTTATCTTTTAAAGGAAAGATATACTGGGGACTTTAGAAGCCGTCGTCCAATAGAGCACTCTATGGTATTCTTCGAAGCGAAAGCTGTAATCACCGTTCAGCAAGTTTGTCTCTTCGCACCTCGCTTTAGGTTCAAGTTTAAAGGCTTAAACTTCTTTTTCACCGTTATAGCACTAACTGAAAACAGCAAGATGGCTGCAGGCAAAGAATCGTCGGCCATACATATGAAGAGACCAGATCCAGTCGTGCACATTGCAATACCTCATCTGAGATTCGACCCAACGTCGATCGGCGATAAACTGCGACTAACAACGACTGTCACCCCTTCGCCAGGACAAGCAAAATTAGTGACTCGGTACTCAATGAAATGGAAGATGAAGTTCTGTAAACCATTTGTTGTACCAAGGTCGAGTTTGTCACGTGGGGCATCTAGAAACATCATAATATTCATCTGGCAGAAGCTGAAAGCCTGCATCCACACATTAGAGGTGCATGCCTTGGTCGAGTGTATCCCAAGCCTTCCCAAGAACTTAACATACGAGTACAAAGGCTGCCGGTTCGTAGACAATTTCAACAAGACATTTTGCCATTCCTTCGATCCTCCACCAACTCCTGACAGCACAAGAGAAGTTCGCAACCTTCGTCACGGTCCTCTACAGGTTACTGACGATTTTCGGGTCAACACAACATTCTTGTGGCTACCCCCCACGTTTCCTTTTGCACCAGTTAGTCGATATGTTTACGCGTACGGTGATGTAACGAGGCTACTTCTGAATGTTATCTGGATCGCCACCAGAGGAACTACAAAAGAAACTTCGCTAAGAGCGACAAATCTTCATCCAAATATAACCGTACGAGTCGAGATTCTGCCTTTGTTCCCAAATGCTGCAGAAGTAAAACGCAACATTACGTTTCGCACTCCAGCTGTCCCAGAGGAACAAATTAGAATCCACAAACTTCGTGCTGACAAATTCGTTCTTACTGCTTCTAATCTATTTTATGTTCGTGTGTCGTGGAATCCACCACCATTCACGAAAGGTCTCGTGGGTTATCATATTGAGTACTTGCAGGGTAAACAACCCGAGAAATCCACCACCACTAATACATCGTTCTACGTGTTTACTGGTATAATGCACAGTGAACCATTATTGATTGAGGTAAAACCTTTATATAATTTAAAGTGGATCAAACCCAAAGGTGTGGCACTTCTACTCAGAGCGTCAGCTCCATACGTTCGTGAGCTCGTGGTCGGAGATCTGAAAGTCGCGGACTTTACGTACAATAAAAACGACAACACGTACGCAGTTAGTTTTACGTGGAACCCGCCAGTTTTCCAAAAGTATAGAGCTGTCGACTACTATCAAATGTACTTCCATCTTATTGGTCATTCAAGAGAGGATCTGTCGTGTCCATCGTACAGGTTCACACCAGGAATAAAGTGCCCGCCTACTAGAGCGAAAACTGCCAAATACTTGCTACCAAATGTCCGTCCAGAAGAATTCATTGTTCTTTCGGTAAAACCAGTGTTCAAGGATTCGCCGTATGTTCAAGGATTCATGGAGACCATAACCGTGGATCGCTTAGAGTCATTTTGCGATGGAAAAGACCGAGGATACTACAGGGATCCCAAGGATTGCGGGGCCTTCTACCATTGTGATGACCATGGTTATACACATCAATTAAACTGTGCAAAGGGACTTCATTGGAACGAGAACATAAACACATGCGTTCCTCAAGATAAAGTTAAATGCAAACACAATCCAATGCCATTGAATGTATCTGGATAA

Transcript

gene20313.t1

TTTAATATTAAGTTCCTCTTAATCTCAGTCTCACTTAAATGTGATTGAGCTTCACGGAACTGAGAGTTTTGCTATTGAAGAACGTCATGGTAGCTCACAGAGTTTGTAGCATTGGGCCGTTGTCGGTCGCTGCTATAGTACTGTTAGGTGCGGTAGCGGTCAAAAGTGCAGTGTTCAACAGCGCTGCAACCGTGAAAACAGCACGATGTTTTGCAAACTGCTTGTCGCAGGTCAAGAATTCGAAGCCGGATCTTGGTTGTCATGGAGATGAATGCAAAAAGTGTGTTGCACCTTGCAAAGTACCGTTCACTACAATACAGAAATGCAAGTCAATTTGTAAAAAATCCAAAATCTGCGAATCTAGTTGCCAGTTTCTCCTCGACTTGAAGAGCAAACCCAACGTGCAAAACGACATTGTTACAGAGAAACCAGGATCTCCGGTGGCAGTTGCTAAAACTGTTACAAATCTCACGTTGTCATGGAAACCAGCCAAAGCAAGTGAAGGGAATGTGGTTTATCTTTTAAAGGAAAGATATACTGGGGACTTTAGAAGCCGTCGTCCAATAGAGCACTCTATGGTATTCTTCGAAGCGAAAGCTGTAATCACCGTTCAGCAAGTTTGTCTCTTCGCACCTCGCTTTAGGTTCAAGTTTAAAGGCTTAAACTTCTTTTTCACCGTTATAGCACTAACTGAAAACAGCAAGATGGCTGCAGGCAAAGAATCGTCGGCCATACATATGAAGAGACCAGATCCAGTCGTGCACATTGCAATACCTCATCTGAGATTCGACCCAACGTCGATCGGCGATAAACTGCGACTAACAACGACTGTCACCCCTTCGCCAGGACAAGCAAAATTAGTGACTCGGTACTCAATGAAATGGAAGATGAAGTTCTGTAAACCATTTGTTGTACCAAGGTCGAGTTTGTCACGTGGGGCATCTAGAAACATCATAATATTCATCTGGCAGAAGCTGAAAGCCTGCATCCACACATTAGAGGTGCATGCCTTGGTCGAGTGTATCCCAAGCCTTCCCAAGAACTTAACATACGAGTACAAAGGCTGCCGGTTCGTAGACAATTTCAACAAGACATTTTGCCATTCCTTCGATCCTCCACCAACTCCTGACAGCACAAGAGAAGTTCGCAACCTTCGTCACGGTCCTCTACAGGTTACTGACGATTTTCGGGTCAACACAACATTCTTGTGGCTACCCCCCACGTTTCCTTTTGCACCAGTTAGTCGATATGTTTACGCGTACGGTGATGTAACGAGGCTACTTCTGAATGTTATCTGGATCGCCACCAGAGGAACTACAAAAGAAACTTCGCTAAGAGCGACAAATCTTCATCCAAATATAACCGTACGAGTCGAGATTCTGCCTTTGTTCCCAAATGCTGCAGAAGTAAAACGCAACATTACGTTTCGCACTCCAGCTGTCCCAGAGGAACAAATTAGAATCCACAAACTTCGTGCTGACAAATTCGTTCTTACTGCTTCTAATCTATTTTATGTTCGTGTGTCGTGGAATCCACCACCATTCACGAAAGGTCTCGTGGGTTATCATATTGAGTACTTGCAGGGTAAACAACCCGAGAAATCCACCACCACTAATACATCGTTCTACGTGTTTACTGGTATAATGCACAGTGAACCATTATTGATTGAGGTAAAACCTTTATATAATTTAAAGTGGATCAAACCCAAAGGTGTGGCACTTCTACTCAGAGCGTCAGCTCCATACGTTCGTGAGCTCGTGGTCGGAGATCTGAAAGTCGCGGACTTTACGTACAATAAAAACGACAACACGTACGCAGTTAGTTTTACGTGGAACCCGCCAGTTTTCCAAAAGTATAGAGCTGTCGACTACTATCAAATGTACTTCCATCTTATTGGTCATTCAAGAGAGGATCTGTCGTGTCCATCGTACAGGTTCACACCAGGAATAAAGTGCCCGCCTACTAGAGCGAAAACTGCCAAATACTTGCTACCAAATGTCCGTCCAGAAGAATTCATTGTTCTTTCGGTAAAACCAGTGTTCAAGGATTCGCCGTATGTTCAAGGATTCATGGAGACCATAACCGTGGATCGCTTAGAGTCATTTTGCGATGGAAAAGACCGAGGATACTACAGGGATCCCAAGGATTGCGGGGCCTTCTACCATTGTGATGACCATGGTTATACACATCAATTAAACTGTGCAAAGGGACTTCATTGGAACGAGAACATAAACACATGCGTTCCTCAAGATAAAGTTAAATGCAAACACAATCCAATGCCATTGAATGTATCTGGATAAAAACCAATGGACTGCCTCTGATAAGGTACTTATATACGTACTGCAGTGCGTCCTGCAAAGCTTATTTAGTAGATCCAGTTGGTACTCATTATATAGGTCCTTGCTTACACGAAGGACGGACATATCCAAAAGGAACTCTGTGTATACTATGAGATTTAACAAATGTAAAACGAACAAAAATGGTCAACAATAAAAAAAAACTAAAAAAAACTAGAAAAATTGACGAAATTATCGAAACGTTGATAAAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01607	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002557	Domain	Chitin binding domain	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036508	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR051940	Family	Chitin-binding developmental regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23301	CHITIN BINDING PERITROPHIN-A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0008061	Molecular Function	chitin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan