Gene detail

Detailed information of gene20568.t1 in Actinoscyphia liui

Genomic Location: chr5:49557616...49573667
NR annotation: XP_031572138.1, COP9 signalosome complex subunit 3-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene20568.t1

ATGGAGGATTTCTTAGCTGCTGTTCGTTCACTTTGTGCGGACAAGAATTACGTCGAACTAGCGAATTATTTGAACCGATCCACAGATTTATTAGCCAAACATGCAGGGCAGCTAGACGCCGCCATAGGGTCGTTGGATCCTGAGCAACATTCCATGGCTTTCATGGCTTTATTGCTTGTGAAGTTGTCTTTGCCAAATTATGGGGACTTCGAGTTGTTCTTCACACAGATACAGCAGTTCATCAGTATCTGCTCAAAAGATCAAATACAGTATTCGATGGAAAAATTTGCTCATCTATGTCACTTCATAACAAAGTGCTTGGTTGACATGAGACAGCCAATGAGAGGCATCCAAATGATGACTGTGGCAATACAAAAAGCCCAGCAGAACAGCACTCAGCTTACTTCAATACATGCTGATCTAGCACAGTTGTGTCTAGTTGCAAAGTGTTTCAAACCAGCGTTAACTTTCCTTGACCAAGCCATATATGATATTAACAAAGAAGGCAATAAGTTTGATGTCAAGTCACTGCTATGCTATTATTACTATGGAGGGATGATTTATGCAGGCCTTAAAAGATATGACAGAGCACTGTACTTCTTTGAAGTGGCAGTGACATGTCCTGCTATGGATGTCAGCCATATTATGCTTGAATCTTACAAGAAATTTATACTGGTATCATTAATACTCAATGGAAAGATAGCCACTCTACCAAAGTATACTTCAAATGTGGTCCAGCGATTTCTCAAGCCTTTGAGCAGTCCATATCATGAACTATCTACTACTTATGCATCAAATAACCCAAGTGATCTACAAGGAATCATTGCTAAACATCAAGAAACCTTTGCAAGGGATAATAATGTTGGATTAGTAAAACAGGTCAGAAGTTCAATTTATAAAAAGAACATTTTGAGATTGACAAAGACATTTTTGACCCTTTCTCTAACTGACATGGCAAACAGAGTACAGTTAAATAGTCCAAGAGAAGCTGAACAACACATACTGCATATGATTGAAGATGGTGATATATATGCTACCATTAACCAGAGAGATGGCATGGTCTCGTTCCATGACAGTCCTGAAAAATATAACAGTCCTAAAATGCTGAAAAAGCTGGATGATGAGATCCGTCAATACCAACAGCTTGATGAAAAGCTTCAAAACATGGACAGACAGCTTGCAGTGAATCCTCAGTTTGTACAAAAGACAATGGGTAGTCATGGAGACGAAGATGTTGGCATTGGACGCATGAGAGAAGATGTGATGATGTGATGTGATCAACCAGTTCTCACCAAGACTATATATTTCTGTTATACATACACCTTTTTCAGAAACTTGGTCCTATAGACTCTTTGCAGTAATCCCCAATCTGGGGGCAAAACAATTGAAATAGTTTGCATTCGTTAGAAAAGTTTTCAATTCTCAAGAGAGAGAGAAACTATTGTTTTGTCCCCCAGATTGAGAATTAGTGCAATGGATCTATATCAAATAGTAAATAGCAGGGGAGTAGCCAGTCTGTCTGGTAAGGGGGGTTATGCTATAACATTCAACGAGTTCTTCCCATCATCAGATTTTGTTATAAATACAAGGTAGAACCAGTGCCGAAAGGGAGGTTCCCTTACCCCTGGAACCCTCCCCTAGCTATGCCCCTGAATAGTACAATGTAAAAAGGAATCATTATCACCATGGTTACTAGAAAGGGCAAAAACAGGCCATTCGAGAGGGAGAGAATTTTCTACCTGCCCAGTTGACATAAAATAGTGGGAAAGTTATAGAAAAGTTTTGCATTTACTCATCTTGATAATTATGGTGAGATTTATTTACCGTTTTACCTTACAGGAAAAATTGTATTTTGTATGTAAAGAGTCAGGAAGAACAAACAAGAAGTGAAGTAAATCAAAATGCTTAAAATATTTAGGAGTGTTAATCCATTATTCCTCAGTCTAAAAGGTGGCTTCATTGTTTAGTGTGCAGTATTCTTATTTGAGAGATTCGCATTTTGACTCCTCTGTCACACCCTTGTCTGCACTTCTCTCTAAT

Protein

Uniprot

Uniprot term	Description
Q6P2U9	COP9 signalosome complex subunit 3 OS=Danio rerio OX=7955 GN=cops3 PE=2 SV=1
O88543	COP9 signalosome complex subunit 3 OS=Mus musculus OX=10090 GN=Cops3 PE=1 SV=3
Q9UNS2	COP9 signalosome complex subunit 3 OS=Homo sapiens OX=9606 GN=COPS3 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717	Domain	Proteasome component (PCI) domain	Interproscan
IPR050756	Family	COP9 signalosome complex subunit 3	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10758	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0008180	Cellular Component	COP9 signalosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12177	COPS3, CSN3; COP9 signalosome complex subunit 3	-	Ubiquitin system	ko04121	deepkoala