Gene detail

Detailed information of gene21049.t1 in Actinoscyphia liui

Genomic Location: chr6:2073023...2087850
NR annotation: XP_020904557.1, uncharacterized protein LOC110242851 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene21049.t1

ATGGATGCTATCTTTGCAAGAGCCTTCTTGGAAGCACTTTCCAACCTTTCTACAGAAGACCCAGGAACCTTACAGTTGATGATAGAGCACGCTTGGGATCCTGAAGACTGTTCACCATTTTTTAAAGTTCTTCGTGACGGCCGTGGTCTCACGGCTCGTCGATTGCCGTCCATGTTTACTTCTGATTGTATAAGAGGAAAGAAAGGATATCGTACAGGTAGACATGTTTGGGAGATTCAGTGGGAGAACGACGAGCGAGGATCGTTTGCCATAGTTGGGGTTGCCACGCCCAAAGCCCCGTTACAGGCCATTGGTTATGAGCCCGTTGTTGGTAGCAACATAGAGTCGTGGGGATGGGATATTGTGAGTAAGAAGCTGTGGCATGGTGGAGAGAGAGGACCGTATCCTGCTGCTCTTGCAAAGATAGGTTTTCAAGTACCTGATAATTTCTATGTCATCTTGGATATGGACAACAGGACCTTGAGTTTTGCCACGAATGACATTCATCTGGGAGTCGCCTTCACTGACCTTCCCAAACAACAAAACCGACCACTGTGCCCGATAGTCAATGCCATATTTGGAAACTGTGACGTCAGAATCAAATACATGGGCAATGGAGAATCTGTACTCTCTCGTATGAAACACCCATTTCCCTTGCATCGTTCTATATCTGAGCACCCTTCATCAGCTACATCTGAAGCTGCGTCCAGGCGAAGATCTACAGGAACCCCAGGGCCTAACCTCGAGAATGCTGTGATTGGGCCTTCTGCTCGCTACAAATTTGCTTACATACGTGGAGAAAGTGTTGCTGTGACGTGCGCAGGCAAAAAAGCAAAGCGACTTAATGCACTGGAGACATTCTGTGATGGTATTGTCATGACATCAGAGCCACTCGTCGATAATGAACTTTTTGAAGTTCGTTTGGATAGAAAGAATAATCGATGGGAAGGTGGACTTGACATTGGTGTGACCTCCAAAGATAGTAACTCCTTTGGTTTTCCATCTTCCTTGGTAGAATGTAAGGAAGTCTTCTTATGGTGTGGTAAAAAGATAATTTACAATCAGTCACTGGAGCAGCAAGTCAGCCAGGACATTTCCGAAATTACAACAGGAGACCGAGTAGGCGTGATGCGCCAACCTGACGACACACTACACTTCTACTTGAATGGCAAAGACATCGGTAAACGTTTTGGTAAAGTACCAAAGACCCTGTACGGTGTGGTGGACGTGTACGGTCAAGCAGAGGAAGTTACCATTACAGGAGGAACTGCTGAGACTCAGTCAAGTAATGATAGTGAAAATCAAGTAGGTCATAATATTGTGTTGATTATGGTACGAATGAAAAATATCATTGAGCTTTTAAAAGGTCCTATCTACCCCGATCTTACAACTGTCACCACCAAACTTGCACAAGACGTGTTACAGCCTTACATGGATATCGTTGATCAGTCTATACGACAAAGGCTCGGTGACCACCTTGCTGAGATTGGAACTGCTCAAGAATTGAAAAAGCTGCTGGGAAGACTGGATGATAGAGGAATGGAGACGCAGGAGGGGTGGGTAGGGATGAATATTGTGCGCAGTATTCTATGGAACTACTCTGATGCAAGCTTGAAATTGGCGAAAACGATTGGACAGTGTGGTTTGCTGAAGCGATTTGTGGATGATATGAGACAGATTGGATCAATAAACATAAACAATGAGAAGCGTAAATACATTGCGGAATCAGCTGTTAACATTCTTCACAACTGCGCCAAGGCAACAGAGAATCGGCAAGTGTTCCGTGATATCAAAGCAGTTGAGGTACTTGCGCCATTTCTTAAATCTGAAAACTCAGAGTTTGTAATTAGCACGCTGCTGACCTTGTCTTACATTACTGAGGAAAACCAAAAAGATCTTCTTAGAACAGACACGAAGACTATTGCAATCCTACGTGGAATGCTGTGTAACGCGGCCAGAAATGAAAGACTTCGAGGAAGCTTAAGCATGGAGGGCAGTTCGTGGTCAGCCCTGGAAATCATCACAGGAATTGCAAACATAGCAGTCAACCCGACCAACTGTGAGAACCTCGTTGAAGCTGACGTCATTCCTTTGTTGTTCGACGTCATCGAGAAGGGTGGGGCCATCGAAAAAGAAAGGTCTGCCAATGCACTTTGGGTGCTTGCTAGTTCGAACAATGGCAAAAGGAAGATACGAGAGCATTCTGGAGCGATTGAGACGCTAAAACAGCTGAGCAAAAACTCCAACAAAAACATTGCAGCTGCGGCGGAGAGAATACTGCTGAGGATCCAACAGCAGCCAATGCAGCAAGCATCAGGCGCTGGAGCAGTGAGAACACCTAGGAAAAATTGTGAATACGCTCAAAATTGCAGACAGTTTTTGGCAACGCTTAAACTAAATGACGTCTTGTTCGAAAAAAGTCATGACAAGTGTTACTGCACCAAGTGTCACGCGTCACGCAACGAGAAGTTGGTTTACACTCAAGGAGAACCAGCTAAAGACTACGTCTTACCGATAGGGTGGTATCGGTGTGCTCTCAAGATAGCACCAACAGCACTTTTACATAACGCCAATAAGAAATGGCACGTGGCATACCATGGCACACAGCCAGCTAGTGTTAAACCAGTACTGGAATGTGGACAGCTTCTCCTTCCAGGAGACACTGCACTGGGTGGAAAGAAGCTTTCAGAAGTCGATGGTCATTTCGGTGATGACAACAAACCCGAAGGATTTAACACCAAACAGGTTTTTGTATCGCCAAGTATTCGGTACTCTGGACTTGATGTTTACGCCAAAGTGCAGTCATTTGAGGATGCTCAAACGAAGAAGGCTTACAAAGCAAAAGTAGCCTTCCAACTATGGATCAAGCCAGATAGCTATAACGTAGGACCACAAACCGTTGGTGCTACAGAAGCCATTGATTCCCAGTTCAGTAACCAAGAAATCGAGTGGTCGACAGTACAGAGAGGGGCCATACACCTGTACGGTCTTCTGATTCATCTCGATGAATAA

Transcript

gene21049.t1

GCAAAACCGAAATTCATGAACTAAACCCTGATGCTTTGAAGGCATAGCTAATTGTGTTTCTAAAATAGCTGAAGTTTGAAGTCATTCATTCAATATAAATTAAGCTTAAAACCTCGAGCACGATGGATGCTATCTTTGCAAGAGCCTTCTTGGAAGCACTTTCCAACCTTTCTACAGAAGACCCAGGAACCTTACAGTTGATGATAGAGCACGCTTGGGATCCTGAAGACTGTTCACCATTTTTTAAAGTTCTTCGTGACGGCCGTGGTCTCACGGCTCGTCGATTGCCGTCCATGTTTACTTCTGATTGTATAAGAGGAAAGAAAGGATATCGTACAGGTAGACATGTTTGGGAGATTCAGTGGGAGAACGACGAGCGAGGATCGTTTGCCATAGTTGGGGTTGCCACGCCCAAAGCCCCGTTACAGGCCATTGGTTATGAGCCCGTTGTTGGTAGCAACATAGAGTCGTGGGGATGGGATATTGTGAGTAAGAAGCTGTGGCATGGTGGAGAGAGAGGACCGTATCCTGCTGCTCTTGCAAAGATAGGTTTTCAAGTACCTGATAATTTCTATGTCATCTTGGATATGGACAACAGGACCTTGAGTTTTGCCACGAATGACATTCATCTGGGAGTCGCCTTCACTGACCTTCCCAAACAACAAAACCGACCACTGTGCCCGATAGTCAATGCCATATTTGGAAACTGTGACGTCAGAATCAAATACATGGGCAATGGAGAATCTGTACTCTCTCGTATGAAACACCCATTTCCCTTGCATCGTTCTATATCTGAGCACCCTTCATCAGCTACATCTGAAGCTGCGTCCAGGCGAAGATCTACAGGAACCCCAGGGCCTAACCTCGAGAATGCTGTGATTGGGCCTTCTGCTCGCTACAAATTTGCTTACATACGTGGAGAAAGTGTTGCTGTGACGTGCGCAGGCAAAAAAGCAAAGCGACTTAATGCACTGGAGACATTCTGTGATGGTATTGTCATGACATCAGAGCCACTCGTCGATAATGAACTTTTTGAAGTTCGTTTGGATAGAAAGAATAATCGATGGGAAGGTGGACTTGACATTGGTGTGACCTCCAAAGATAGTAACTCCTTTGGTTTTCCATCTTCCTTGGTAGAATGTAAGGAAGTCTTCTTATGGTGTGGTAAAAAGATAATTTACAATCAGTCACTGGAGCAGCAAGTCAGCCAGGACATTTCCGAAATTACAACAGGAGACCGAGTAGGCGTGATGCGCCAACCTGACGACACACTACACTTCTACTTGAATGGCAAAGACATCGGTAAACGTTTTGGTAAAGTACCAAAGACCCTGTACGGTGTGGTGGACGTGTACGGTCAAGCAGAGGAAGTTACCATTACAGGAGGAACTGCTGAGACTCAGTCAAGTAATGATAGTGAAAATCAAGTAGGTCATAATATTGTGTTGATTATGGTACGAATGAAAAATATCATTGAGCTTTTAAAAGGTCCTATCTACCCCGATCTTACAACTGTCACCACCAAACTTGCACAAGACGTGTTACAGCCTTACATGGATATCGTTGATCAGTCTATACGACAAAGGCTCGGTGACCACCTTGCTGAGATTGGAACTGCTCAAGAATTGAAAAAGCTGCTGGGAAGACTGGATGATAGAGGAATGGAGACGCAGGAGGGGTGGGTAGGGATGAATATTGTGCGCAGTATTCTATGGAACTACTCTGATGCAAGCTTGAAATTGGCGAAAACGATTGGACAGTGTGGTTTGCTGAAGCGATTTGTGGATGATATGAGACAGATTGGATCAATAAACATAAACAATGAGAAGCGTAAATACATTGCGGAATCAGCTGTTAACATTCTTCACAACTGCGCCAAGGCAACAGAGAATCGGCAAGTGTTCCGTGATATCAAAGCAGTTGAGGTACTTGCGCCATTTCTTAAATCTGAAAACTCAGAGTTTGTAATTAGCACGCTGCTGACCTTGTCTTACATTACTGAGGAAAACCAAAAAGATCTTCTTAGAACAGACACGAAGACTATTGCAATCCTACGTGGAATGCTGTGTAACGCGGCCAGAAATGAAAGACTTCGAGGAAGCTTAAGCATGGAGGGCAGTTCGTGGTCAGCCCTGGAAATCATCACAGGAATTGCAAACATAGCAGTCAACCCGACCAACTGTGAGAACCTCGTTGAAGCTGACGTCATTCCTTTGTTGTTCGACGTCATCGAGAAGGGTGGGGCCATCGAAAAAGAAAGGTCTGCCAATGCACTTTGGGTGCTTGCTAGTTCGAACAATGGCAAAAGGAAGATACGAGAGCATTCTGGAGCGATTGAGACGCTAAAACAGCTGAGCAAAAACTCCAACAAAAACATTGCAGCTGCGGCGGAGAGAATACTGCTGAGGATCCAACAGCAGCCAATGCAGCAAGCATCAGGCGCTGGAGCAGTGAGAACACCTAGGAAAAATTGTGAATACGCTCAAAATTGCAGACAGTTTTTGGCAACGCTTAAACTAAATGACGTCTTGTTCGAAAAAAGTCATGACAAGTGTTACTGCACCAAGTGTCACGCGTCACGCAACGAGAAGTTGGTTTACACTCAAGGAGAACCAGCTAAAGACTACGTCTTACCGATAGGGTGGTATCGGTGTGCTCTCAAGATAGCACCAACAGCACTTTTACATAACGCCAATAAGAAATGGCACGTGGCATACCATGGCACACAGCCAGCTAGTGTTAAACCAGTACTGGAATGTGGACAGCTTCTCCTTCCAGGAGACACTGCACTGGGTGGAAAGAAGCTTTCAGAAGTCGATGGTCATTTCGGTGATGACAACAAACCCGAAGGATTTAACACCAAACAGGTTTTTGTATCGCCAAGTATTCGGTACTCTGGACTTGATGTTTACGCCAAAGTGCAGTCATTTGAGGATGCTCAAACGAAGAAGGCTTACAAAGCAAAAGTAGCCTTCCAACTATGGATCAAGCCAGATAGCTATAACGTAGGACCACAAACCGTTGGTGCTACAGAAGCCATTGATTCCCAGTTCAGTAACCAAGAAATCGAGTGGTCGACAGTACAGAGAGGGGCCATACACCTGTACGGTCTTCTGATTCATCTCGATGAATAAACAAACAAGAATCTGGATTAAAATTCCACTAGCCTATTGTGGACACCAAATCATGGTCCCAAGGGTGTCCACTATAACAAGAGTTGACTGTATTACAGACACCAAATCATGGCTATAACGAGAGTTGCATGACTGTAATACGATAGAATATGGTTGATTTTTGAGTGGCAAGAGTTGCTAGTTTTGTTCACTTTTGTATATATACTTAGAGCTAGTGATTTAATTTTGTAAGAGACTTAGGAAGTTGCTAGAGGACGTTGCGTCCGCTTCACTGACGTAATTCATTAACAATGTTATGGAATATCATTCGTGTTAGCCTGTAAATACAGTTGCCTTCATTTCACGGCGTGTGAAGTCAAGCTAAGACTACACGAGACAATTTCGTATTAATAATTCTAAAATTCTTTATTACTTCTTATCCAATCAAATTGCATTATGTCATAATAAGGGCGCGCACAGGTCACATCCCTTTAAACGATTTGAGGTACTCGATGTTAGAGGATACAAGAGACGTAAAAAAAAACGTAAAAAAAAAAAAAATCAAAATATTTATAGCAGATTTTGTAGCAGAAATATATATTCAAAACAATAGAGTAGTAAAGTGATGACGTCATAAACATTATTTTCTCTGTATCATTGTTTTGGTTCACAATATCGATAGGACATCAAGAAAGGAGATTACACACCAAATTTCATGGGAATCGGTTAAATAAAAGCTGAGATATGGCCGGTACTGAGGAACCGAGACAGAAATACAGTGATTTGTATGTGATATTTAAAAAACCAGCATGAGTGTTTCATCGTGGGATATAAACACGAGGCCGCAGGCCGAGTATTTATATCTCACGATAAAACACGAACTGCGAGTTTTTTAAATAACTTCTAAAACCCATCATTTGCAACTATTATAACATGAATTTATGACCAAAATTGTTTTAAACGCTAAAACCTAGTTTACCATGATTCTCGATCCGACAGGCATGCGCAGAATATACCTCAGTACATAAATGTTCATCCCACATGGAAAAGGGTCTTTGAGTATGTTAAGAGGACGTTACGAATTGCTTTCTATGCTTTCGTCGGTAATAATAATAATAATAATAATAATTTATTTCTAGTGCATTACATAAATTCTCAATGCCCTTACAATTTAAGAAGAAAAATTAATATTTTATACATATAAACTAAATAAATGTATATTAATGCAAAACTAGAAAATATATAAATATAATGTGTATAAAAATAGTAAGATAATTAAATAATTATTTAGGTGACTAATATTCGTCAGGCAAAAAAAATAAGTTTGCAAGTTAATGTTCAAACGATAGATAGTTCAAAAAGGTAGGTTTTTAATTGTTTTTTGAAGCTTTCTAAGTTATCGGTACTGTACGAGGTCAATGATCCGACAACTACTGAGACCTTGTACTGATAAAACACTGATGCATAAACATGAGTGTTTTATCAAATCAGTTAAAACAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88838	SPRY domain-containing SOCS box protein 2 OS=Mus musculus OX=10090 GN=Spsb2 PE=1 SV=1
Q99619	SPRY domain-containing SOCS box protein 2 OS=Homo sapiens OX=9606 GN=SPSB2 PE=1 SV=1
Q96A44	SPRY domain-containing SOCS box protein 4 OS=Homo sapiens OX=9606 GN=SPSB4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003352 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan
PF07177 all species →	Neuralized	Neuralized	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR050672 all species →	Family	F-box/SPRY and SOCS box protein families	Interproscan
IPR006573 all species →	Domain	Neuralized homology repeat (NHR) domain	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12245 all species →	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene21049.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.