Gene detail

Detailed information of gene21081.t2 in Actinoscyphia liui

Genomic Location: chr6:2679418...2692268
NR annotation: XP_020904508.1, mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene21081.t2

AAATGGTTGATCGAGAAAACATGTCTTCGACAGTTACGGTTAAAACTCTTGCTTCTAACCTTCGATCGAACGTTGTAGACGAATTAGGGATGTATCTAAACCCTAGGATGCCTCTGAAAGACTTTAGAACGCTAGCTGGGAAACTCGGCTACACTTTTATGCGAGTACGAAACTTTGAACGTGAAAGAAATCCAACTGCATCGATACTCGAAGACTGGTGGACGTCTTTTGGTAAGAAAGGAGAAGCAAAAACAGTTGCTGATATTATAAGTGTGTTGGAAGAGATGAAGAGGGATGATGCTGTCGATTTGTTAAAACCTTACGAATTTACTGGTGAGTTGGTACCGCTACGTTATTACGTTCTCACGAATTTCATGACTCTGTGTTTATGTCTGAACATATTCTTGCATATTTTTGCATATAATGATGTTGATCATTTGGCTTCGTCTGTGATCTAACGCTACCTTGTTCCTATTTACAAGAAACAAGATTCCCCGAGGAAAATGAACTCCCGTTAAATAATAGTCATGCTGATGCACCTGAAGCTGTTGTCTCTGGCGTACAAAACAGGATTGAAAATTACATCCACCCAGGCTCTGAATCAGAATCCAGATCACAAGGTCGGCATCCAGCAATGTTAGAACAACATAACACAAGAACACAAAACCATCGGAATAATCAACCACCAGTCACTCAAGGAAATACCAGCAATCCATGTGCAGAAAATGCAAATGCTGCTCCAGTTTACTCAAGACCAGGAGGAGTTGAAATGTCAGTCCCAAGACCAGTAGAACCACCAGTTGTGTCTGATAAAGTAGCACTTGTGATTGGGAACAAGAACTACCAATGTGAAAGGTTAAGGGGTCTATTCTACCCAGAAAGAGATGCTGAGGAAGTTGCAAGAGCTCTGTGTGAACTGGGGTTCAAGGTTGTTTCCCTCGTCAACTTAACACTGAGTGAGATGCGAATCGCTGTTCTTTCATTTTGTAGACTTTTAGGCAAAAATGTCTACGCAGTTCTGTATTATGGAGGGCACGGCTATGAAGATAGTGGTAAGAACTATTTGCTTCCAGTTGATGCTGATTTACAGTATAAACGCGAGGACAGTCTTTGTGCTCAAGAAATCTTACAGACCATGCAAGAGTGCGATACGGCATTGAATCTACTCATTATTGACTCCTGTAGAATAAGGCTTCCCGACAGAGGATCAAGACCGACATTTGTGAAGCGTGGTGCTAAGGGAAATAACATATTCGCATATTCTTGCTGTTCTGAACAAGAAGCTCACGAAGAACGTGACCAGGAGAATGGTCTGTACGCCCAACACCTCCTCAGTCATATTAGGAGAAGTGTAAGGGTTGAGAATATCCTTATGGATGTGGCAAGAGATGTGTCGTTCAGTAATAACCACTACATCAACCAAAGGCCTTGCCATGAGAGTGATGCATACTTGGACTGTAGGCTTACTGATCCTATATGTCCAGGGGTGTTACCCCATGAGTTCCAAGAGAGAGTTGAATTGTGGAAAAAGGCACATATGCTGCCCAAAACGTTTGTGGTCCAGGAAACAGATCAACTTCACCTGGTAGCGGAGTTCAGGGCAAACTTTTCCAACGTGATGGAAGTGATGGTAATCGCTTCCAATAAAACACCCTACCCACTGACAAGATTTGTAATGGATCTCCGTGTACCCACGCCTGTTCGAGCAGAAGTTGGCATGCTATCAGGGGACGTATTGGAACCAAACGGACAACTTAGACAGGTTTTCAAGCTGTCTGCTTTGCAAAAATTACTCGACAAGCTAATAACTGACTTACATGTATACTATTATGTGAATGGACGAACCCTAGAAATACAGCAAGCCATCAACTTGGGTTGCCCCCTTGTCTCATCAGTCTTTACCGAGTGGGACTGGTGGGTAACCTGTGGACGCGCCCCGCCAACCAAATCAACCCAAGTGTAACTACTATATATTAAAGCTTCCGTCCGTCATTATCGCCTGTGTTACTCAGTATACTACTGCTATGTGCTCGTACAAGGTGGAGTCCTGCTGACAACGAGGGTTTACTCAATTCTTTAAGAGTCCTTCCAAAAGAAATTGTATCAGAGACACTGTCTTCTGTGTTGGTGACTTCACTGTCGCTTTCCGATTCCTCCTGACTGATAGTCGCAGCACTGCTAGTCACGTGTGTTACATGGGCTTCCTGTGTTCACCTATGATAAAGTAATGCATGGGCTTCCTGTGTATTAGTGTACCAAAACAAGCCATGTATGGTTTACCTGTGTGTGATCATGCAAAAATATAAATGGGCTTCCTGTGTGCGACTATGATAAAGTAATGCATGGGCTTCCTGTGTATTACTGTACAAAAGCTATGCATTACATGGGCTTCCTGTCTATCCCATTGCACTTGGACAAAGTCCATATAAATAAGATTGTCATGGAGACCAATCGAATAACAAACACGAGACATAAATGAAGTGATTTGACGTTAGTTGTATCATATACAACTCTATGTACATTTGTATATAATTATTTCATATTGGGAATAAGTGTTTCATATTGAGACGAACTATGAGCATAAAAAGCCAGTTAATAGCCTACCAGTTAATAACATTTTGGCGGCAAAAAATTCTTATTTTTACAAAATATCAAGTGTGTCAACGTGAATGGTAGTACTGGTCGCATAGGCAGTTTGGTGCCTCAAATCCAAGATAGCCGCATAGTACTTCGATTAACGACATATTGAGAATGGATGAGGCGCTTAATCTTGTAAATACGGTATGTTTTACAATGTACAGACTATCCTAGTCTGTGTATCAGACTGGAGATGACTGTTGCTTTAGATACACTGTTCCAGAAGCATTGTTCTAATAGGATACCAGAAGCATTGTTCTAATAGGATTCCAGAAGCGTTGTTCTAATAGGATTCCAGAAGCATTGTTCTAATAGGATTCCAGAAGCATTGTTCTAATAGGATTCCAGAAGCATTGTTCTAATAGGATTCCAGAAGCATTGTTCTAATAGGATTCCAGAAGCATTGTTCTAATAGGATTCCAGAAGCATTGTTCTAATAGGATTCCAGAAGCATTGTTCTAATAGGATTCCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2TBA3	Mucosa-associated lymphoid tissue lymphoma translocation protein 1 homolog OS=Mus musculus OX=10090 GN=Malt1 PE=1 SV=2
Q9UDY8	Mucosa-associated lymphoid tissue lymphoma translocation protein 1 OS=Homo sapiens OX=9606 GN=MALT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003196 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan
PF02883 all species →	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013041 all species →	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR052039 all species →	Family	Caspase-related proteases and regulators	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan
IPR008152 all species →	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR033540 all species →	Homologous_superfamily	MALT1, immunoglobulin-like domain superfamily	Interproscan
IPR001309 all species →	Domain	Peptidase C14, p20 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22576 all species →	MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07369	MALT1; mucosa-associated lymphoid tissue lymphoma translocation protein 1	EC:3.4.22.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.