Gene detail

Detailed information of gene21098.t1 in Actinoscyphia liui

Genomic Location: chr6:3192660...3200097
NR annotation: KXJ25057.1, Mitogen-activated protein kinase kinase kinase dlk-1 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene21098.t1

ATGGCGGTAGATTTGGTTTATCACGCCTCTAAAGGGCGATCATCCACTGTTCGTAAACTCCTTGAAGAAGGAATCCATCCCGATGCTTGTAATGGTAATGGAGAGACAGCGTTGCTTCATGCAGCCTTGTCAGGAAAAACAGGCACCGCGAAAGTTTTATTGAAATATGGCGCTGACGCTAACAGGTGTTCACAAAACGGCTTATCTCCTATCAAAGCTGCGTGTAAAGATGACAATGTAAAGACGTTAGCCCTGTTAATGAACTATGGAGGGAGTCTGGACGCAACGGACAATGCCGGCAACGAGACTGCAATAGTTGCAGCTCACAGATACCAAAGTCATCGAGTGATTAAGTACATTACTGATCTTAAGAAAGAGGCGCGCCTGAATTACCACGTGAATGATGAGGTCACAGAGGCTGAAGACGCACAAAAGAAACAGAAATTTAAAAAGCTTACCAAGAGACAGGAATTCCCTGGGAACTATTCATCTATTCCTTGTATTGACCTCGATGAGTTAAAGACTCTACACGAAGGAAAAAAGTTCAGTTTTACTGCGCCGCACGTGACGTTTTGCTGTGGCTCGTGGCACAGGCTTCCCGTAACAACAAAACGCCTCAATAAGGCCGACTATGTTGAGGAGATGAAGAGAGAGATGGACATACTACGCATTCTTCGTCATCCTCACATTATATCCCTCCTAGCTGTCATAACTGGTCCAGTAGCACAACACATGAGCTGTGTCTATGATTACTTCAAGCTAGGAAACCTGTACCACGTGCTGCATGAATCTGATATTACACTGAACCTTCCTGATCGACTACACATTATGGAAGATATTACAAGCGCCATGGTATACGTTCATAACAAGAATATCATTCACTGTTATATCAATTCCTATAGTGTCTTTATGAACGAGAACATTAGGGCGAAGTTAGGGAATTTTGAGCATGTGTATCAGAAGGCTGAGGGTATGACCGATGACAGTAATGACTCGGTGGTGGTTGGGCATGTCGTTGAACAGCAGCCTTGGATGTCTTGTGAGCAGCTTAAGAAATACCCTGTAGATAAGAATGGCGATGTTTATAGTTTTGGAGCTCTGTTTTGGGAATGTTTAAGCAGACGTCAACCCTGGTCATGGCTAACAGACAAGTCAATAACTGTAGCCATGTGTGATGAAGGTCAACGCCTTCCATTCATGAAAGTATGGCCCGAGTATGTCACAGAGATACTCAAATACTGCTTAGGACCCGAGGAAGAACGACCAGACTTCGTAACCCTCAGTGAACAAATCAAGTGCATCAAGACATTTGGTTGGACTTTTAAGGCTGATACCTTGGACAACGCTTTCGATTTGTGGTTTTATGGAAAGAGAAAAGTTTCTTTAAAACGGAGAAGCATTGGTGATCCTTTAGCTTCAAAGATCTCGGGAATGTTGTCAGAGTTTAGCGTCGATTGTATCACAGACATTGATGAAGAAGGTTCAAAGATTCGGGTACTGGATTCACGGAGGAAATCATCCATGAACTTGAAACAAGGAAGAAGAAGTACCATTCATGCTGGACTTGTTGGCGTTATGAAAGCTTTTCACCATTCAGAAAAAGATATACGCAAGCAACGAGACATCGATAAGTACGGCGGTGAGGTCGCCGAACAGCTGGAGTTTGTTCGTGGAGTTCGGAAAACCTCCAAACATCGTTCGAGGCATCGATGGGCCAAGGAAGTTGTCGTAAGGCGAAAGCTAGAGGGCGATATCGATAGGGTGAATGTGGAAAAACAAAATAAAGAAAAGACGCAGAAGGACAACAGGTCAAAGAACGGGAGACGAATTCGTCGGTTAAGCCATGGTCCTGAAAGCATTGCTCAGTTGCGCACGATTGCTGGGAAGTACGGTAAATGGGACTGGGCGAGGTACACCACTGGACATGAGTACACCCTTCCTGAATATAAATATGAAATGTTGTCGGACGAAGAGTATGACGAGGAGGAAGGACTGCCAGTTCACATGGAAACGGCTGGCACCTTTGTTCAATACCAAGGAGAGAATATAAAGGTTGGTGAGATCGTTCCCAAGGAATGCCAAGCGATGGAATTAATTGATGAGAGAGATTCAAGCGGAGAAGATACTGGAGGATTTGCAAATCCAGAACAAGATATCGAGACTAGAAGTTTAGAAGAAACCGTGGAACATCACTGGAAACAAGACGATGATGAAGATGAGAATGAAAAAGAAGAGGAAGAGGAAGAGGAAGATGATATAAATGGAGAGAACGTGAAGAGAAAGCACAATAAAGACAATCTTGATGATGATGATGATGACGCATCTTATTTTATTCGTGGTGGCAAAAATGGTGGAGAAGATGGCGGAGAGGATGGCGGTGAAGATGGTGGACAAAATGGTGGAGAAGATAGCGAAGAAGATAGCGGAGAAGATGGCGGAGAAGATGGTGGAGAAGATGGCGGTGAAGATGGCGGTGAAGATGGTGGAGAAGATGGCAGTGAAGATGGTAGAGAAGATGGCGGAGAAGGTGATGGAGAAGATGTCGGAGGAGATCGCGGAGAAGATGGCGGAGACGATGATCAACAAAACGGTAACCAAGATGGAAGCCAAAGTGAAAACCATGGTAAACACAAAGATGGTGGTAACGATGGCACCTACGATGACGAACAGGAAAACGGCCAAAAAGATAGTTACCAAAGCGAGGAGCAATGTGGCTGCCAAGAAAATCAGCAAGTGTATGGCCAAGATCGCAACAAAGATGGCAGCCACTATTGCGAGAAAGTTTCCAACCAAGTTGAGAACCAATATGCGAATCAAGATGGCGGCCAACAGGATGCCACCCCAGGAATGATGGGTTTCGAAAACGAAGTCGCATCTAAAGTCTATATCGTTCAGCACCACAACGATGATAATGTGCAACATGGCGTCGATCAAGACATCAATGGCCACACTATTGAACAATTAGATTTAATTAGGAAGGACGAGTTGATTATCGAAGAAATAAACGAAGGATCTACAGAGGGACATGAAACTGAAATACCTACAGCAATGACAATCGAAAGTTTTGAAGATTTGAAGGGATTTGATATGGATGTAAAAGGGAGTGACTACAACGCAGAAATAACTCACGAAACAAACTTTGATAGCGTCAAGGATTCTCGAGAGTTGATTAAGAAACTCGTAACCACCTCTAGCATACCTGACCAATATAGCGCTAGCAGAAGTGACATCACTACTGATATTACCAATGAAAACGATCTTGATGAAAGTAAGGGCACTCGAGAATGGAACATAAAAGATGATATAATCACAGCTAACGAACAATCAGGTGATGAAGTTGAGAATCAGTACTCATTTCAAACAAAAGAAACAGCTGCAGTTTTAACTGCAACTCAGTCATCGGATGAAGAAATTTTTACAAATAATTATGTTGACCAATCTACTTGGAATGACAACCCCCTTGATACAGAGAACATTTCGGATTCACCAGGTGGTCAGTCCTTCAGCAGTGCTGCCGCACACTTCCTCGACGAGTTCACCGAGTGGCTCGATGAGTATACCAAGCAAAATAGTCCTTGTTCAAGTGCCAGCTCCAGCATCCGGGAATTTCCAAGCGAAGGGACTGGATTTCCTCGCGACATCAGGGACTTTCTCGACGAATCAACCGTAAATCCTCGCGACATCCAGGACTTTCCCGACGAGCCAACCGTAAATCCTCGCGACATCCGAGACATTGCCGATGAGTCAACCGTAAATCCTTGCGACATCCGGGGCATTCCCGATGAGCCAACTGTAAATCCTCACGGCATCCGGGACTTGCCAGGCGAGGGAACCACGAGTCCTCTCGACATCCGAGACTTTTCCTATGAGGAAAATACGATTTCTTGCGACATGAGTGAGAATAGTTCATTTGAAGAATTGGTCGCAAAATATGACTCACATTTGAGGACGCTTGATTTTCAACCCGTCGATTCAAAGAGTGGAACTCCAGACGAAAAGAAAAGTTTGTCCGACGAAGCGGTGGAAGAACGTGAAGACAAGTGTCGTTCAGCAAGAAGCGATATTTAG

Transcript

gene21098.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q23915	Probable serine/threonine-protein kinase kinX OS=Dictyostelium discoideum OX=44689 GN=kinX PE=3 SV=2
Q7T6Y2	Putative serine/threonine-protein kinase/receptor R831 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R831 PE=3 SV=2
Q2IBC0	Hepatocyte growth factor receptor OS=Rhinolophus ferrumequinum OX=59479 GN=MET PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009024 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR039339 all species →	Family	Inactive serine/threonine-protein kinase TEX14	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23060 all species →	TESTIS EXPRESSED GENE 14	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007094 all species →	Biological Process	mitotic spindle assembly checkpoint signaling	Interproscan
GO:0007140 all species →	Biological Process	male meiotic nuclear division	Interproscan
GO:0008608 all species →	Biological Process	attachment of spindle microtubules to kinetochore	Interproscan
GO:0043063 all species →	Biological Process	intercellular bridge organization	Interproscan
GO:0051306 all species →	Biological Process	mitotic sister chromatid separation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17540	TEX14, SGK307; inactive serine/threonine-protein kinase TEX14	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.