Gene detail

Detailed information of gene21666.t1 in Actinoscyphia liui

Genomic Location: chr6:14133520...14135794
NR annotation: XP_001624082.1, 39S ribosomal protein L13, mitochondrial [Nematostella vectensis]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene21666.t1

GTTTATAAAATTTTGAAATTTTGAAGGTTGATCTGTGCTGTTTTCAACAGATGAAGAGCTGAGGGCAGTGTTTTATAAAATGGCATTCACTAATCGTGCCTCACAGAGCTTTCTAACACACGCAAGACTATGGTATTTAGTGGACGCGAGAGACCAAGTTAATGGCCGTTTAGCCGGGTACATAGGTCAGATCCTACAAGGCAAGACCAAGCCAATCTACCACCATGCAATCGATGTAGGAGACTATGTCGTAGTAGTTAATACTAAAGATATTGTTTTAACCGGGGCAAAGTGGAAAGATAAGCTATACCGTCATCACACAGGGTACCCAAGCGGGCTAAAAGAGATCAAGGCAAAGGACTTGCATAAGAAGGATTCAACACGTGTATTATGGAGAGCAGTGAATGGCATGCTACCAAAGAACAATCTGAGGCCTGTTTGGATGAAGAGGCTGTATCTGTTTGAAGATGAGAACCATCCCTACGCAGAGAATATTTTTGCAAGGTTGGAATCACCTGCGTCCATTCCTAAGAGACTACACGAGTACACGCCTGAAGAGATAGCGAATTATCCTAAACTGTTTTGATGGTCAATACACAAGAAATTGAAAATAAAAACTGCATTCAAGATCCTTTTCATAGGAACAAACAAGCAAAACTGGTTTCTGTCAGCTAGCTATAGTTATCAGGGCTTGAACTTCTGTGAAACATGTACTAGCAAATTTTTGCTAGAATTTGATCAGAGATCACTTGTGTTGTTCCTTCAGGGACCACTTCAAAAGTGGAACAATGAGTATGGTTGTGTTGGTGTGGCGTTATGCCTCGAACTGAGACCCTCTTAGAAGTCATACCATACTCTATTATATTTGTCATGGTTTAATTCACATAAGGCAAGGTCACCCTAGAAGACTCATACACTATCTGCTTGCTCTCCTGAACCATGCATTAGGGCTGAGGTCAAAACAATAGTCCTTAGTAGGGACCCAATTTTATTGGTTTTGGTGGTGGGTACCGGGAAATCCCCCTCATGGGTTAGTTGAAGTCCTTGATAGCGGTGTTTGTCCAAATACCTTGAAACAGACAGTAGATTCATTGCTGCAATTTGGCTTTCAGTTTTGGATTACACTTTCAGAGGTCCCCACCCTGGTAAATGGGGTCCAAGGATAATTGTTTTGACCTCATCCCTCTACCCCCTCCCCCCCCCAAAAAAAAATATTATTATCCCCTCAGAGGACCCTTGTACAATAAAGACCCTCTACCATGTAAACAGGGCCTTAGTGATGATCTGGCTTATGGGCTCCTGATCTGGTTTACAGTGAACTCTCTCTAAGGTGGACACCTTCGGGACCAAATTTACTGTCTGCCTTAGAGAGGTGTCTGCCTTAAGAGAGAGTTCATGTAACCTGATATCCAAACCTCAAAACTGAAAGCAGTGCTTTATTACAGTGTACAACGTTTGTGAGTTAACCTTAACAAAACTCGTTTGTGTCACTTGTTATTTTACTTTGTGACAATATGAAAACTGACCAGACGTACCTGTCATCAGATTGCGCCTGTTATAAAATTTCGTAAACATCAGGTGTCCACTTTGAGAGGTTTTTAAAAGGTATTTTGAACCAAATTGAAAAAAAGAAAGTGTCCGCTGTCCAGCTTAGAGAGGTGTCCGCCTTAGAGAGACTTCAGTTACAGAGAAACAAGTGGAATTCGGCAGGGACCAAATTTGCTGTCTGCCTCAGACAGGTGTCTGCCTTAGAGAGGTGCCCGCTTAGAGAGAGTCGACTGTATACTGAAACAATTAGTATTCAAGTACCAATGATATGACATGTCAAACTGAAATAACAACACAGCTGTACACTTACTGTATTTCAAAACCAGATCTTGATCAAAAGGCATAAAGCCTACATGACCAGCCTGAAAGGGAGCATGGTAGAAATTGCTGAAACTGTAGAACCACAAATATCAACACAACGATTTACTATAACCATTGAAAATTGTTGCTCAAATTGAAAAGTGAGCAAATGACTACATTACTGAAAACTGCCCTTTTGGTCTAATTACTTAGGCTTGGGGCCACTTGCCCAACAACCTTTTTTTAATAGGTGTATGTCACAATAAGTTGATACTTTATTAAATAATATTAAAACTTAAATGCTTTTATTAGATCAGCAGAAAGCTATTTTTCATGAAAAAAAAAAGAAAACCCTTTGGCAAAGATTATTCATCTTCAGGAACCCAGGGGTATTATTCTGTCGCTCTTTTCTCGCTTGCCAAAAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D1P0	Large ribosomal subunit protein uL13m OS=Mus musculus OX=10090 GN=Mrpl13 PE=1 SV=1
Q3SYS1	Large ribosomal subunit protein uL13m OS=Bos taurus OX=9913 GN=MRPL13 PE=1 SV=1
Q9BYD1	Large ribosomal subunit protein uL13m OS=Homo sapiens OX=9606 GN=MRPL13 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008178 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00572 all species →	Ribosomal_L13	Ribosomal protein L13	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036899 all species →	Homologous_superfamily	Large ribosomal subunit protein uL13 superfamily	Interproscan
IPR005822 all species →	Family	Large ribosomal subunit protein uL13	Interproscan
IPR005823 all species →	Family	Large ribosomal subunit protein uL13, bacterial-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11545 all species →	RIBOSOMAL PROTEIN L13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02871	RP-L13, MRPL13, rplM; large subunit ribosomal protein L13	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.