Gene detail

Detailed information of gene21930.t1 in Actinoscyphia liui

Genomic Location: chr6:19212968...19247674
NR annotation: XP_020905487.1, bystin [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene21930.t1

ATGGGCAAAGACAAGAAAGAAAAAAGACACAAGGGAGGACTGACAGAGGATATAATCGGCGATAAGACAGTAAAATCGTTTAAACGAGTGAAACAGCGTAGAGAAAGACAAGCAGAGAAAGACGAAGCGTATGTGGAGGAAAAGCTGTCCAAGAAGATTTTAGAACAAGCAAGGAAACAACAAGATGAACTTGTGGAGGAGTTTGGTTACACAGCAACAAAGTCACTAAAAACTGCACAGACCAGCCTTGGTGGTGCAGCCAGACATGATGACGATGATGACAATGATGATTCTGATGATGATGATGCATCGGTAGCAAGTGAAGCATACTATGAACATGTGGAAGTCGATGAAAATGAAGAGAAGGCATTTGAAATGTTCATGTCTAGAGATGCTCCAGCAAGGAGAACCTTGGCTGATGTCATCATGGAGAAAATCCAAGATAAAAAGACTGAAATAGAAACCCACATGTCTGAAAGAACTTCAGCTCCTCAAATGGATGAAAGATTGGTTAAAGTTTTCAAAGGTGTTGGCGAAATCCTCCAAAAATACAGATCTGGAAAACTTCCCAAAGCTTTTAAGTTTATTCCATCGCTAACAAACTGGGAAGAGGTGATGTTCATAACAGAACCAGACCAGTGGACAGCAGCAGCAGTTTACCAGGCAACAAGAATCTTTGTATCCAACTTAAATGCAAAAATGGCACAAAGGTTTTTTAATTTAGTTCTTTACCCAAGAGTAAGAGATGACATTGCAGAGTATAAAAGACTCAACTATCACCTTTACATGGCTCTAAAGAAAGCTTTGTTCAAACCCGCTGCTTTCTTTAAAGGAATTTTACTTCCATTGTGTGAGGCCGGTGACTGCAGTCTGCGTGAAGCCATCATCATCAGTAGTGTTCTTGCAAGGACAAGCATACCTGTTTTACACTCCAGTGCTGCAATGCTGAAAATAGCTGAGATGAACTACTCAGGAGGCAACAGTATTTTCTTAAGGACTTTCTTTGATAAGAAGTATGCCCTTCCATACCGAGTTATCGATGCTGTAGTCTATCATTTCATACGTTTCTTATCAGACAAGCGAACACTGCCTGTTTTGTGGCATCAATGTTTACTGACATTTGTTCAAAGATTTAAAGAAGACATCTCTAGCGAGCAGAAAGACTCGTTACTTGAACTTTGTAAAGTCCACATACACGGCCAGGTCACAGCTGAGATTCGACGCGAACTTGTCAACTCTAAAAGTAGAGACACTGAAACAGACATGCCAATGGAAGAGATGTCTTGATATCAAGGACTAGATCACAGACGTAATTATAGCAACAAGCCTTTCAATGCAAAGAAAACACGGTCGCACGATTACCGTATCTATCGCACAGTTACCGTATCTATCGCGCGGTTACCGTGTCTATCGCACAGTTACCGTATCTATCGCGCGGTTATCGTGTCTATCGCACAGTTACCGTATCTATCGCGCGGATACCGTATCTATCGCGCGGATATCGTATCTATCGCACGGTTACCCTATCTATCGCACGGCCTAATAACAAGTTGACTCAGCTCACGCATCGATCACGGTAATCTTGTGCGATCGCAAAGTGTCGGCTTTTGTCACGATTACCTCACGAGAGGCCTATACGATATATAAAGTATATATCAGACAACATAAACATAGCAATATTGTCAAATGTATAAACTGAGATTCGAATATCAACATGTCCTGCATGGTTTTGTTTAGATTACTGTGAGACCTACACAAAGAAAACTAATCAGAATTCAGGTCGAAAATGAAACATTTCAACTTTGAAATGAGCCAGCAGAAAACAATAATATTTGAACTTGGATCCATCAAAATAAAATGTTTTCGTTCTCAATTTTGATTGGTTCTTGTTGTCTAAGTTGCCCCTATTTCAGTAGATGCACAGTAACTGTGGTCGCTAATTTCTTAATGTATTAAAATACTTTTATAGCTTTATGTGTTTGTTCACAGTGTAGGGATACCTTTGTGAACATTTCTTCTCGAAGAAACCAGAATTTACCATAGCAGCACGTCATAATAATAATGTCTTACTCAGTGATTCCACAATGGCTCTTCCTTTACTGAGACACTCACTAGTGAGAGCACTTTAACACGTGTGGGATGCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7S7F2	Bystin OS=Nematostella vectensis OX=45351 GN=bysl PE=3 SV=1
Q5E9N0	Bystin OS=Bos taurus OX=9913 GN=BYSL PE=2 SV=1
Q13895	Bystin OS=Homo sapiens OX=9606 GN=BYSL PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006921 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05291 all species →	Bystin	Bystin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007955 all species →	Family	Bystin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12821 all species →	BYSTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0030515 all species →	Molecular Function	snoRNA binding	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14797	ENP1, BYSL; essential nuclear protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.