Detailed information of gene21952.t2 in Actinoscyphia liui

Genomic Location: chr6:19691031...19756144
NR annotation: XP_031569216.1, uncharacterized protein LOC116303758 isoform X2 [Actinia tenebrosa]
Species abbreviation ALIUI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
G3V801Neurotrypsin OS=Rattus norvegicus OX=10116 GN=Prss12 PE=1 SV=1
O08762Neurotrypsin OS=Mus musculus OX=10090 GN=Prss12 PE=1 SV=1
Q5G266Neurotrypsin OS=Trachypithecus phayrei OX=61618 GN=PRSS12 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003264 (this species only)
Ubiquitin familyE3|E3 activity RING|U-box · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00431
all species →
CUBCUB domainDomainInterproscan
PF01822
all species →
WSCWSC domainDomainInterproscan
PF00530
all species →
SRCRScavenger receptor cysteine-rich domainDomainInterproscan
PF00629
all species →
MAMMAM domain, meprin/A5/muDomainInterproscan
PF00057
all species →
Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF04564
all species →
U-boxU-box domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000859
all species →
DomainCUB domainInterproscan
IPR002889
all species →
DomainCarbohydrate-binding WSCInterproscan
IPR003613
all species →
DomainU-box domainInterproscan
IPR050686
all species →
FamilySRCR-S1 Scavenger ReceptorInterproscan
IPR001190
all species →
DomainSRCR domainInterproscan
IPR036055
all species →
Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR000998
all species →
DomainMAM domainInterproscan
IPR035914
all species →
Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR002172
all species →
RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR036772
all species →
Homologous_superfamilySRCR-like domain superfamilyInterproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017448
all species →
DomainSRCR-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48071
all species →
SRCR DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004842
all species →
Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567
all species →
Biological Processprotein ubiquitinationInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene21952.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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