Gene detail

Detailed information of gene22098.t1 in Actinoscyphia liui

Genomic Location: chr6:22047797...22104138
NR annotation: XP_020904223.1, 26S proteasome regulatory subunit 6A-B [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene22098.t1

ATGACGTTCACATGTTGTCCACTTGTCATGATGCAAGCACTGCTGAAACTGGTAGGAGGGACAGGTATCTCACCACAGCCTGGCTCTAAGAAATCCAAGCCAACTCACCAATGTAAAACTTATTTCCTCCCTGTCATTGGATTGGTTGAACCTGAAAATCTGACACCTGGAGACCTTGTGGGTGTCAACAAGGACTCATATTTAATATTAGAAAAGTTGCCAGCTGAGTATGATTCAAGAGTCAAGGCCATGGAAGTTGACGAGAGGCCTACAGAACAGTACAGTGATATTGGTGGTCTAGATCAGCAGATTCAAGAATTGGTAGAAGCTATTGTTTTACCCATGACACACAAACAGAGATTTGAAAACCTTGGTATTGCTCCCCCTAAAGGTGTTTTATTATACGGACCTCCAGGAACAGGAAAAACCTTGCTAGCTAGAGCTTGTGCTGCACAAACCAAGTCAACATTCCTAAAGCTTGCTGGACCTCAACTTGTGCAGATGTTCATAGGCGATGGTGCTAAGCTTGTCCGTGATGCCTTTGCACTTGCTAAAGAGAAAAGTCCAGCTATTATATTTATTGATGAATTAGATGCCATAGGAACCAAGAGATTTGACAGTGAAAAAGCAGGAGACAGGGAGGTGCAAAGAACTATGCTTGAGCTTCTCAATCAACTGGATGGTTTCAGCTCACACCATGATATTAAGGTCATTGCTGCAACCAATAGAGTTGACATTCTTGATCCTGCTTTGCTAAGATCAGGTCGATTGGATAGAAAGATAGAGTTTCCTAACCCAGACCAAGAAGCAAGGGCTAGAATTTTACAGATTCATTCAAGAAAGATGAACGTCAGTGCTGATGTCAACTTTGATGAGCTGTCACGATGTACAGATGATTTCAATGGAGCCATGTTGAAGGCAGTTTGTGTAGAAGCGGGTATGATTGCTCTGCGAAGAGAAGCAACAACTGTCTGCCACGAAGATTACATGGATGGTATCATGGAAGTGAATGCCAAAAAGAAAGCCAACTTGCTTTACTATGCTTAAACCTAGTCTTCTTGTTGAACAATGTTGTGCATTAGTCATGTTAAGATATGAACCCTCATCCATTGTCGATCTAACAATTTGGTTAATAATTGACATGTAATTAACCTTGAATACAACCAACAAACATCTTCATGATCATGTTGGATTATGGTTCATTCAACATGTTGACTTTGTTTAAGTACACATGTAGGCCTTTAAAAACCAAATCAATGGTGTGGTTATCTGTAAAACAGTTTTGTTAGTCTCCACTAAATTACAGTATTAAATGTATAGCTCTGTCTACTGCAATACTTTCTGTTGGCCTTGTTCAAATGTAAGTCAGCATACAACACAAGCTAACTTGTGAAGAACACAAGTAGAACTCAGCTCTACTTTCTGCAATGATTGCAGCAACTTGTCTCGCAACGATTTTGACCATTGCATGTATTGTAACACACTGTGCAATAGTTTGTGCAACTTGTTTTACAACACCATTGTGAGACGAGTTGCATGTGTTTTACAACACCATTGTGAGACAAGTTGCATGTGTTTTACAACACCATTGTGAGACAAGTTGCATGTGTTTTACAACACCATGACAAGTTGCATGTGTTTTACAACACCATTGTGAGACAAGTTGCATGTGTTTTACAACACCATTGTGAGACAAGTTCCTAAAACGTATGTACACTGAAACATATTCTAAAAATAAAAAAGAATATTGCTGTAATCGAAACTCGCAAACCATTTCTTGAGGCATATCCAAACGCAGATCTTTCACAATTTCGTGTTGGCCCTACATACGTTACTTTTAATCATGGAGGCTTAGCCTATGATGTGTTTATTTCTAAAGTTGTTCGTGGAGAGAAAATTAATCATTATACAAACTCTGAAATTTGAAAGCGTTGGGACCGGTCTGGAAGCCTCCAGCACATTTTCCTCCAGAATCTCTACAAAACCTTAAAGCTTTGTACGCAATTCCCGCTAACAGTTTTTCAGAGAAGCTTAAATATTCAGGCAGCGAGCTTATAAAGCTATTGTTAGAACAAAACATCTGTAGGCCCGAATGAGGCGTTTCCGTGGAAACCTAGGGATATATTTAAGGAAATTCAGTCTAAATTTTATACAGCCAAAGAAGCCCACAAATGGTGCAGAGATTAAATTTTGCTCTGTGGTAAATAAATAAATAACTGTTTATTTAAGTGTCCAAT

Protein

Uniprot

Uniprot term	Description
O42587	26S proteasome regulatory subunit 6A-A OS=Xenopus laevis OX=8355 GN=psmc3-a PE=2 SV=2
P17980	26S proteasome regulatory subunit 6A OS=Homo sapiens OX=9606 GN=PSMC3 PE=1 SV=3
Q63569	26S proteasome regulatory subunit 6A OS=Rattus norvegicus OX=10116 GN=Psmc3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF16450	Prot_ATP_ID_OB_C	Proteasomal ATPase OB C-terminal domain	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR032501	Domain	Proteasomal ATPase, second OB domain	Interproscan
IPR050221	Family	26S Proteasome Regulatory ATPase	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23073	26S PROTEASOME REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0008540	Cellular Component	proteasome regulatory particle, base subcomplex	Interproscan
GO:0036402	Molecular Function	proteasome-activating activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03065	PSMC3, RPT5; 26S proteasome regulatory subunit T5	-	Proteasome	ko03051	deepkoala