Gene detail

Detailed information of gene22413.t1 in Actinoscyphia liui

Genomic Location: chr6:28147676...28149973
NR annotation: XP_020893712.1, sex-determining region Y protein [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene22413.t1

GTTTTTTAATCACAAACATTACATTTAAAACACGATGTACAGATTGTTACTTCCAGTCCATGATTCCACATCATGTCTCCATACTTCGGTGTCTTTTTAAGATTATTCATTACATACTTTGTAATTATTCTTTTTTTCTATTTTTCGCGAGAAATGAAATTTTTATATTTATTTTACTTAAATTTACATTCCTCCATGGAGTTGTGTTAGTTTTACATGTACCAATGCACTATATTACTGTAAGCTGTAATAGACAGAGTTGGACTTGAGGCTTTGTTGACTGCTGTAAGAAGTGGTAGACGACCAAGGCGGTATTGTAGGTGTTGCGAGTGTGTGTATTTCGCCATTAACTCCTTTGAAAGGAGAATTCAGTTCAATGCAACAATTTACTAAACAGCTGCAACACAAAAGACTGCCTCAGCGATCTTCAATTGACCGCCATTTTCCCTCCATTTTGTCAAATCCTAATAGAAACCTATGCTTTCTTGTCGTAAATATAGAGTATGGGTGATAGAAGATGGCAGCTAATTTCCATGTAATTTATACCATACCTTTGTTATGTGTTTTTATACGTGCCGTATGTGTGGATTCATTCTAACGACACTCAGTAGCAGTGATAAATATTTAATCGATTTGAAAGGGCCTTTGTTGATCGTTTAGGATAAAAGCCTGACGATTTAACTTAAACAACTAGAGATCACTAGCCTCACAGGCAGAACACAGCACAACAACTAATTACTGGAAAACTACTCAACTTTGTTCTCTTTGCCGATTCGAGTGTCCGAGTCACCATTAGTCTGTCGATTTTGTCCTGAACTAAAAAAGTTACAATTGTACCAGCCAGATTCCAAAATGGCAGCAGAGCCCCACATTAAGAGACCCATGAACGCATTTATGATATGGTCGAGCAAGAAGCGACGACAGCTTGCAAGAGAAAATCCGAAACTTCATAACTCGGAAATCAGCAAGATTCTAGGCTCAGAATGGAGGAAGCTGGCGGAGGACGAAAGACAAAAGTTTTTCGCGGAAGCCAAGATTTTGAATGAACTGCACATGATTGAACACCCGAATTATAAATACCGGCCAAGAAGAAGGATAAAACGGCGATCGCTAAGCAGACAAAGTTGTGGGTTATCTTGCTACTGTCATGAGCATATCAATAAAGGTTTTCCGAGATCTCAAGACGAAGAAGACTCAAGTCAAGCCAGTAAAGATGTCCATGCTGACGAACCTGAAAGAGAGATAAGAAATGAAGAATATGAACGCGTTGAAGAGAAAGACCAAGAATTGATTATGGCTAAAATTAAAGAAGAGAGACCAGAGAGCCCGCTTGGAGAAGCCTCACAGCAAAATACATCCCAAATAATAGCACAAGATGCGACGAACGAAGAAGAGGACGACGACTTCCCAGATTTCCACCCTTCAAGCTTCCATCCTTACAGCCCAAGCGACGGTGCACACTTTGTCAGTTCGTTTGTTCCAAGTCAGCTTTTTTGGCCTACAAAATATCGTAGCTACACACTGCAAACACCAACAGCCTCGGCCATCTTATGCACGTGCTGTGCCACAATCGCACCGAGAAGTTTGCTCCATCATGGCTCGCAACACGAACATATTTACCCTGCTATAGACAAACGCCTCCACAAACATTCTACAAGGCTACAAAACTATCGGAACACTAAATGGTAAAACAGTGAACCTATATTTATCGCGAGATAGAAAATCTCATTTGTCAATTAATTTCTAGTCTGGCCGTCGACATGAAATTGCACGGTAATCTATTGTGAGTGAATCCAGTTTGTGGTGTATTGTGGTTGATGTGTTTGTAGAACGTCAAAGTCGTGGTAATCTTGTTAATATTATGAGCTGTAGACAGTCCCTTTTTTCTCAAAACCACATTCGCATTTAAAATGTGAGCAGTGGCTTTTGTTTGAAGCATATTGACCAGACCTCCAACTACTAATTGTTCATAAAATAATTCCCTCTTTAGGCAGTGCTGGGGTCCAAACTGCAATTTATTGATCGATCATCTTAGAGCTAATTTGTCTTTTTGTTTTAACAATGTGAAAACGTTATTCATTATTTAGGTTCCAGTCCAATTGCCTAAATTTGTATTTAATTGTATGGCTGGCTCTATCAGAGAAAAGTGGTTGATTTGCTATTGTTTTGATTGAACACTTGACTTCGCAGCTGGCAAACTGAAACTTACGTACTGGCCCAAAAAAAGAAGTTAAAGTAATTCATTCTGTTCAGTTATCGAACTCTAAACTGTGTAAATAAAACTTTATATGCCTGACG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q20201	Transcription factor sox-3 OS=Caenorhabditis elegans OX=6239 GN=sox-3 PE=2 SV=1
Q24533	SOX domain-containing protein dichaete OS=Drosophila melanogaster OX=7227 GN=D PE=1 SV=1
Q6RVD7	Transcription factor Sox-21-B OS=Danio rerio OX=7955 GN=sox21b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000488 (this species only)
Transcription factor family	HMG · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR050140 all species →	Family	SRY-related HMG-box transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270 all species →	SOX TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009653 all species →	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene22413.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.