Gene detail

Detailed information of gene22471.t2 in Actinoscyphia liui

Genomic Location: chr6:29054287...29085593
NR annotation: XP_020892418.1, sodium-coupled neutral amino acid transporter 9 homolog [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene22471.t2

GCATAAGCAAGAAATAAACTCGTGATCAACAAAGACTTGGTCAAACAATTGACAGAGATGGAAGAGAAATCGCCTCTCTTGTCTATACAAGAAGATAATGGAAGGACACCTAAAGCTGAACAAGTCGACGCAGAAGCAAGAAATAAACTCGTGATCAACAAAGACTTGGTCAAACAATTGACTGAGATGGAAGAGAAATCGCCTCTCTTGTCTATACAAGAAGATAATGGAAGGACACCTAAAGGGAGTAGAAGAAGTTCCATTACTGGTTCAAATGGTTCAGAGTCTAGGTCAATAGGACGACAGCCTTTCACCCATAATTCAATGCAAAATTTAATGGGCAATCCAGAAGACATAAAGCGTGCAGCAACCTACCACAGATATAAATATATATCCAAATTATCAGGACACAGTGCACATATGATTATCCCTGACCACATGCTTCCAATAGAACTGTTTCTTATATATCCAGGAAAACCTAAAGCTAAACAAAGTAGCATTATTACAATTTTTTCAATATGGAATACCATGATGGGGACTTCCATACTAAGTATGCCATGGGCATTAAGCCAGGCTGGATTTGGTTTTGGTCTCTTTCTTATGCTAACCATAGCAGCAATATGCCTGTATACAGCTTATCTTGTCCTTAAATCATCAGAGACATTTGTTAAACATGGTGAAATGGTAGAGTTTGCTGATATTTGTAAATTGTATTTTGGTCGTTGTGGAGAGTTTGTTGCTACTGTGTTTTCCATTGCTGCTATTGGTGGAGCTGCTATTGTGTTTTGGGTTCTCATGTCTACTTTCTTGTTTAACAGCGGAAAGTTCATTCATGAAAGTGCACTAGATGCATTCCCAAAGAACCAGTCAGTTACTGAAGGTACTGTAGCTGTTGTGTACATCTTAATATTTGTTACTGTAAAAGCATCTATATGGGGGATCAACATGGACTTCTCAAACCACATCAAAGTACCAGAGTTCAGGCTTCAATTCCCTGCTCTGACTGGAACACTAACATTGGCATACTTCATACACAATTGTGTGTTGTCTATCATGCGTAATCAAAAGAATCCAGAAAATAATTCACGTGATTTAAGCATAGCTTATCTGTTGGTAGCATTTACGTACATTTTCGTGGGTGCCGTGTTCTATGCTGCTTTCCCCATTGAAAAATCTTGTATTAGCCAGGTTTTCCTGGATAACATGCCAGCAAACGATGGTATGGCATTCGGTGCTCGTATTGGTCTGTTCTTCCAGTTGGTGACGGTGTTTCCTCTTCTCGTGTATATTGTCAGAGTACAGTTCATGTTGTATGTCTTTGGTAAAGCCTACCCAGGTCCAGTGCACGTACTTGTTCTTAATATTGTTATTATAGCTTGTTGTGTGGCGATTGCTTGTCTTTATCCTCATGTTGGTACTATTATCAGATATGTTGGATCGTTGAGTGGACTGGCTTACATCTTCACTTTACCGTGTTTAATACATTTAATGGAAAGAAAGAAACAACAATATCTCTCTTGGACTAGGATTGCATTCCATGCATTTCTTATGTTATTAGGAGTTCTTAACTTAATATCACAATTTCTAATTACTTGACAGCAAATTCTAATTCTAATTTCAAATTACTTGACACGGCACCAAAATAAGGATAATTCAAAACCACCTAAAACTACACTGGTCCCATTTATATATCGTGGGTGCTCTATTAATTATTTATTTTCAGGCCTTCTAGATGTAGACAGGGGAGGGGGTGCTTAATAGAGAGGGGGGCTTATTTAAAACTCATGCACCACGAGTCAAAGACGAAGACACGGTTTTTTCTGAAATGCCAGCCAGTTTTAAGAAATAGTGATACATTTTCTTGCCATGTACAAACTGAAACAAATACAGGCTCGTATAAATGTGTTTCTACTGATCAAGAACCTTAATTCACCATCCATTTTTGTAGTTTTATGAGGGGGGTTTAGAGAATGTAATTTTTCGGGGGGGAAACGGGATCAATTCTGATAAAATATGCGAAAATGAGCGATTTTTAGAGAATGTAATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08BA4	Neutral amino acid transporter 9 OS=Danio rerio OX=7955 GN=slc38a9 PE=1 SV=1
Q19425	Sodium-coupled neutral amino acid transporter 9 homolog OS=Caenorhabditis elegans OX=6239 GN=F13H10.3 PE=3 SV=2
Q3B8Q3	Neutral amino acid transporter 9 OS=Rattus norvegicus OX=10116 GN=Slc38a9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004182 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01490 all species →	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013057 all species →	Domain	Amino acid transporter, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22950 all species →	AMINO ACID TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003333 all species →	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015179 all species →	Molecular Function	L-amino acid transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14995	SLC38A9; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 9	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.