Gene detail

Detailed information of gene22554.t1 in Actinoscyphia liui

Genomic Location: chr6:30383444...30407569
NR annotation: XP_020893723.1, uncharacterized protein LOC110232845, partial [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene22554.t1

ATGGTTGGATTTGGATTTGGATTTGGAGGGTTTTCCCAACCATATGACAAAACTGTACATTACTGGCCACTGGATATAAATACCAGCTTACAGGACGTCGTCACTAATACAAGTGCCATTAGAGATGGCCGCGTTAAAAGCCTGTACTTCAAGGGGCCTGGACACGGCTATTTATTTATACCAAATTCGCGCCTCAAATTTGGACGTTTCCAAGATACATGCATAATAGATCCATCACAGTGTAGGGACTATTTGACATTGTCCTTATGGCTCAAGTACACTAGACGGGAGTCTAAAATTTACAGGAGACAGTTTTTTATTGGAACGTCGACTAAATATGGAGACAGTCCTGGATTTATGATCCATGCTACGCCTATAAAGGGTCAAGAGGACCGTGTGACTGTAACAGTAAATAACGGACATAAAACATGGACCGGTTATACCGCTGTGAAATACGACACGTGGGCTCAAATAGGCTTCTCATGGTCTAACACCAGTGGGTTAGTAATATTTAGAAACTGCGAACGAGTGCAGACTGTACCCTTTGGTCGCATAAAACCTACCGATAAGACTGCAGGAAAGTATTTATACCTTGTTAAAGCACCTGGGCGTGGCAAAGCAGCCTTTAATGTATCGTACGATGACGTAGGGGTGTGGTATTCGGAACTGCAACAAGTAGACACGGGGAGAATATGCTCCAATAAAGTTGCTCCATCCTCAACATTTGAAATTCAAATCCAGAATAAAATATATGGGGAAAACGGCCAAACCAGCAGAAAGATATACTGTAATACTTCTGCAAGCGTCGCAATGGTGCTTGGAAGTCCGTCCAATTTGACGATAGTTGCAACATCCTCACGTGCTATCCTGATATCATGGAAACCTCCCTCATACAACACCACGGTCAAAGGGTACTGGATATTATATAAAAACGCTTCTTTAGCGAGTGACATCACTAAGTTTGAAGTCGGTCTACCATCTAATAATCAGTTCCTGATATCTGGACTAACAAGAAATACTCGCTACAAGATTTACGTAGTTTCTGTGGGAGACTTTCCCTACATACCAAGCCAGCCATCGGAGGTGGATGCTTCTACAAATAAAGACGAGTCTCGCTCGACATCATCCCTGAACGTCTACATTGTGAACGTCAAGACAATGCGGCTTAGCTGGACACGCCCTACAGACCATTCCATGCGTTATTGGTACCGAGTATTTATACAGTGGTCAGAGCGCACAATAACCCACAGTAAAGAAATCTACCGTGGTAGAGTGACAAGGTTTACTTACAGTAGTTCTAAAAAAATACCCTCCCCTCAAGTATGGAGTGTCATGGCGATGGAACCGAACCCAGTAACAAATTGTGTACAAAACCTGACCATCAAGTCGGTGAGCTGGAACTCTGCTGTGATCACGTGGTCTCCTAAACACAGTGTCCCTGAGATGGTAGACAGATATCACGTCATCATTACGTCATCAAACAGAATTGTTAAGTTTGTTACAAACCATACATACGTGCATGTAGCTGGGTTTAAGCAGATGTCGAGATATCGTGTTAACGTACAGCAAGGCAACTACAAGGGATATGGGCCTGCACTCCCAAGTGACGTCATCTTTAGGACATCAGATGCAGACGAATGTGCTGGTATAAAAAGCAACTGCTTTAACCCTGAAATAACGTTAATGTTTGATGACAGCCAGTGTTTCGACAGTATGTTAAGTTGTCATAGTAACGCTCGTTGTATCAACACCGAAGGATCATTCTTTTGTAAATGTAAACAGGGATACATAGGTGATGGCTGGATGTGTCAAGAAATCTCCAAGAAGATGACAGAAACGGATTTCTGCCAAGAAGAGACATTGCAAGAGATCAAGTGGCAACGAACATTACGAGGATACAACGAGACTACTCAATGTCCACAGGGCGTTACAGGTATCGCAAGACGGCACTGTGCTGGTCCATCAGACCAACCTGCTCAGTGGGGTGTCCCGAACCTTAGTAACTGTGTGTCTAAGTGGGCGTTATACATGAGTGACATGGCAAATGACCCTTCGATTAGTGCATCGTCTGTGGCTGATCAGACTGCTAAACTGACCGAACAAACTGACAAGATTTACCCAGGCGACCTCATGGTCGTGGTAAATGTTCTGGATGTGCTGTCTGCTAGAGAGGGGAAGATGGAACCTGAAAACATCGAAGAAACAAGGAAATTCGCTGAATCAGTGGTTAGCACAGCAAGTAACATACTTGACTCCAAAATCATTGAACAATGGAACTTCATACCACAGATTGAACGTAAAAGTAACGCTGGTACGTTACTCAACAGTATGGACAGCGTTGCGTTACAGTTGGCACGTACAGGCAATCACAGCCACACTGCTATGCCTAATGTCGTGCTTGATGTGTTTTCGATTTCGAAAACCCTGAAGTCTTCCAATGTTGTTATTGGCCCAAGCAAGCAGACAGATGATCAGCCTTATGCTGTATTTCCCTCGTCTGAACTCAAACAAGGTGAAGATCTCCAGTACGTTACCTACGTGTCTTACACTACCATGGGCTCGCTCTTGGCTCCTCAGTCAAAGAGCAATGCAAGTGTTAACAGTGCAATAGTGTCCTTAACTGTGTCTGATCTCAAACGTAAAGAATTCAAGGAGCCCGTTACAGTGATTTTTGCTCATAAACAGAATAAAGACGCACGAAAAGTGAATTCGTCATGCGTGTTCTGGGATATGTCAAGGTAA

Transcript

gene22554.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000054 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16489 all species →	GAIN	GPCR-Autoproteolysis INducing (GAIN) domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR032471 all species →	Domain	GAIN domain, N-terminal	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR051587 all species →	Family	Adhesion G-protein coupled receptor	Interproscan
IPR001879 all species →	Domain	GPCR, family 2, extracellular hormone receptor domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR036445 all species →	Homologous_superfamily	GPCR family 2, extracellular hormone receptor domain superfamily	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45813 all species →	EF-HAND DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene22554.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.