Gene detail

Detailed information of gene23066.t1 in Actinoscyphia liui

Genomic Location: chr6:39573449...39598556
NR annotation: XP_020897532.1, indole-3-acetaldehyde oxidase [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene23066.t1

ATGGACGAACGACCTCTGTTCAATGACCAAAATCGAAAGATCCTGGAAGATTGCTACAATGGCATAATCCAACCAGGTTCTGCCCCATCGTCTGTTGCTACGCTGACACTGCACATCAATGGCGTCCAGTTTAATGTCAGCAACCCTGATCCTAACACAAGTCTGAATGAGTTTATACGCAGTCAACAAGGGTTCAAAGGAACAAAAGTTATGTGCAATGAAGGAGGATGTGGTTGCTGCGTGGTTGCACTTACGAGAACTGATCCTCTGACTGGCAGAGACATTACGTTATCTGTGAACTCGTGTCTTTTTCCTCTCTATGCTGCTAATGGATGTGAAGTCACGACAACTGAAGGCATTGGCAATCGAAAACGTGGCTTTCATTCGATACAGAAAAGGGTGGCAGAGCGTAATGGCAGTCAATGTGGTTTCTGCACACCAGGGATGGTCATGAGCATGTACAGTCTTCTCAAAGAATGTCCAAAGCCAACCAAACAACAGATTGAGGACAATTTCGATGGGAACATTTGCCGTTGTACAGGATACCGACCTATCCTTGATGCCATGAAATCGTTTGCTGTTGATGCTGACCCTATAGACATTGAGGAGCTAAGTAAGTGTACTGCCAAGTGTGATGACTGTAAGTGCAAGAGGCAGGGTGCAGTCCCTCAAAATGCTTCCGGTACTGAGTGGTACGCTCCAACATCATTAGCACAACTGTATGCCATTCTAGAGAAACACACCCAGAGTAATGTAAAGCTCATCTCTGGTAACACAGGGAAAGGTATTTTCAAACAGGAAGGTCCGTTTCATGTCATGGTGGACATCAACGCAGTACGGGAATTACATTGCTCCACGGAAGTGAGCAGTCACATGGTAGTTGGTGGCAACTTGTCACTTGCATCATTCATCAAACTGTGTGAATCCAAAGCAAGCAAATCGTCATCGTTCGCTGCTATTGCCAAACATTTAAGAGTTGTCGCCAATACTCCTGTACGAAACGTCGGGTCTCTCGCTGGTAATCTTATGTTAGCACATGCCCATCAAGACTTTCCATCAGACCTCATGACTATATTTGAAGCAACTGGAGCAACGCTGTTGATTGGTGGTCCAGTGTTAAGCCAAGTATCTCTTAAAGACTTCCTAAATATTGATATGAAAGGAAAGGTCATTGTAGCCATTGCTTTGCCATTTCTTCCTGACAACGTTTTCGTGAATACGTTCAAGATTACTCCAAGATCGCAGAATGCGCATGCGTACGTAAATGGAGGATTCGCCATCCCTTTTGACAAGGCAACCATGACAGTGACGTCACAACCACGGCTGGTATATGGGGGAATAACCTACAACTTTTTCCATGCAGAAAACACAGAAAAATTTCTAGTAGGAAAAGATCTTACAAATCCAGACACGCTAAAAGCTGCTCTTGAGATCCTTGAAAACGAAGTAGTTCCCGAACCAAAACTCATCGTTCATAACGGCAGCACTGTGGCGTACCACAAGGATCTAGCCTTGACCCTATTTTACAAGGCTTACGTTGGTGTACTCGGTGATCGTGCGTCTCCAAGGATCCAATCTGCAGGGAAATCTATTCTTCAAGAAAGAGCTATTTCTAGTGGGATACAGAACTATGATACCAGACCTGATATATACCCTGTCTCCAAACCCATGACCAAGATTGCTGCTAAATTACAGGCCGCTGGTGAAGCTGAATTTGTCAACGACATTCCAATCCGAGAGGGAGAAGTGTATGCAGCATTTGTCACAAGCACCAAGGCAAATTGTAAAATAGACAAGATTGACCCCACTGAAGCCCTGGCTATGTCTGGGGTGATACGATTCTTTGATGCCAGCGATGTACCAAAGGGTGGAATCAACACCTTGAAGTTTTTCAACTTACCGAGTCCCACCGATCGCGACGAGGAAGGGGTGTTTTGCAAAGGAGACGTTTTATTTGTTGGTCATGCCCTCGGTATTATAGTTGCTGACACTCAAAAACTTGCTGACCAGGCTGCCAAGGTTGTCAAGGTTACCTATAAGGAATGCAAGCCTCCTATTCTAACTATACCTCAAGCCATCGAAGCCAACTCATTCGCTCCTCCTTTAACGCCACCGTGGTCTGATTTTGCACCGGACATTGATGTTGGCGATGTTCAAGGTGCAATGACGTCATGTCCTCACGTGATCACCGGCGAGGTTGAGTGTGGTGGCCAGCATCATTTTCACATAGAAACACAGGTTTCTTTGGCTGTTCCACAAGAAGATGGGATAACTGTCTACAGTGCAAGTCAAGGGGCAAGTATGGTGCAGAAAGCAGTCAGCGATTTTTTGGCAATGCCAGCAACAAGTGTTGATGTTATTGTCCGGCGCTGTGGAGGGGCATTTGGTGCAAAAGCCATGCGAGCCAACCAGATAGCTTGCGCTTGCGCACTAGCAGCCAAAGTCCTTGATAGACCCGTGAAGCTCAAGATGAACTTCAATACCAACATGGCGACAGTGGGTGGAAGAGCACCACACTTGACCAAATACAAGGTTGCCTTCAATGAAGAAGGACTCTTACAAGGAATCGAGATGGACTACTGTGTTGATACAGGCTGCACACCGGAGGATAATGACATGATTTGTGCTGGTAGACATTGGGATAATTGTAAGTAA

Transcript

gene23066.t1

GGAACTATTACTTAGTAACTAACAGATCACTTTGCAGAACACGTCCTCTCTGAAGTACAATATATTTTATATCAGAAGAAAGCCTATTATCAAGGACACTGAGTCTAGCTAGAATGGACGAACGACCTCTGTTCAATGACCAAAATCGAAAGATCCTGGAAGATTGCTACAATGGCATAATCCAACCAGGTTCTGCCCCATCGTCTGTTGCTACGCTGACACTGCACATCAATGGCGTCCAGTTTAATGTCAGCAACCCTGATCCTAACACAAGTCTGAATGAGTTTATACGCAGTCAACAAGGGTTCAAAGGAACAAAAGTTATGTGCAATGAAGGAGGATGTGGTTGCTGCGTGGTTGCACTTACGAGAACTGATCCTCTGACTGGCAGAGACATTACGTTATCTGTGAACTCGTGTCTTTTTCCTCTCTATGCTGCTAATGGATGTGAAGTCACGACAACTGAAGGCATTGGCAATCGAAAACGTGGCTTTCATTCGATACAGAAAAGGGTGGCAGAGCGTAATGGCAGTCAATGTGGTTTCTGCACACCAGGGATGGTCATGAGCATGTACAGTCTTCTCAAAGAATGTCCAAAGCCAACCAAACAACAGATTGAGGACAATTTCGATGGGAACATTTGCCGTTGTACAGGATACCGACCTATCCTTGATGCCATGAAATCGTTTGCTGTTGATGCTGACCCTATAGACATTGAGGAGCTAAGTAAGTGTACTGCCAAGTGTGATGACTGTAAGTGCAAGAGGCAGGGTGCAGTCCCTCAAAATGCTTCCGGTACTGAGTGGTACGCTCCAACATCATTAGCACAACTGTATGCCATTCTAGAGAAACACACCCAGAGTAATGTAAAGCTCATCTCTGGTAACACAGGGAAAGGTATTTTCAAACAGGAAGGTCCGTTTCATGTCATGGTGGACATCAACGCAGTACGGGAATTACATTGCTCCACGGAAGTGAGCAGTCACATGGTAGTTGGTGGCAACTTGTCACTTGCATCATTCATCAAACTGTGTGAATCCAAAGCAAGCAAATCGTCATCGTTCGCTGCTATTGCCAAACATTTAAGAGTTGTCGCCAATACTCCTGTACGAAACGTCGGGTCTCTCGCTGGTAATCTTATGTTAGCACATGCCCATCAAGACTTTCCATCAGACCTCATGACTATATTTGAAGCAACTGGAGCAACGCTGTTGATTGGTGGTCCAGTGTTAAGCCAAGTATCTCTTAAAGACTTCCTAAATATTGATATGAAAGGAAAGGTCATTGTAGCCATTGCTTTGCCATTTCTTCCTGACAACGTTTTCGTGAATACGTTCAAGATTACTCCAAGATCGCAGAATGCGCATGCGTACGTAAATGGAGGATTCGCCATCCCTTTTGACAAGGCAACCATGACAGTGACGTCACAACCACGGCTGGTATATGGGGGAATAACCTACAACTTTTTCCATGCAGAAAACACAGAAAAATTTCTAGTAGGAAAAGATCTTACAAATCCAGACACGCTAAAAGCTGCTCTTGAGATCCTTGAAAACGAAGTAGTTCCCGAACCAAAACTCATCGTTCATAACGGCAGCACTGTGGCGTACCACAAGGATCTAGCCTTGACCCTATTTTACAAGGCTTACGTTGGTGTACTCGGTGATCGTGCGTCTCCAAGGATCCAATCTGCAGGGAAATCTATTCTTCAAGAAAGAGCTATTTCTAGTGGGATACAGAACTATGATACCAGACCTGATATATACCCTGTCTCCAAACCCATGACCAAGATTGCTGCTAAATTACAGGCCGCTGGTGAAGCTGAATTTGTCAACGACATTCCAATCCGAGAGGGAGAAGTGTATGCAGCATTTGTCACAAGCACCAAGGCAAATTGTAAAATAGACAAGATTGACCCCACTGAAGCCCTGGCTATGTCTGGGGTGATACGATTCTTTGATGCCAGCGATGTACCAAAGGGTGGAATCAACACCTTGAAGTTTTTCAACTTACCGAGTCCCACCGATCGCGACGAGGAAGGGGTGTTTTGCAAAGGAGACGTTTTATTTGTTGGTCATGCCCTCGGTATTATAGTTGCTGACACTCAAAAACTTGCTGACCAGGCTGCCAAGGTTGTCAAGGTTACCTATAAGGAATGCAAGCCTCCTATTCTAACTATACCTCAAGCCATCGAAGCCAACTCATTCGCTCCTCCTTTAACGCCACCGTGGTCTGATTTTGCACCGGACATTGATGTTGGCGATGTTCAAGGTGCAATGACGTCATGTCCTCACGTGATCACCGGCGAGGTTGAGTGTGGTGGCCAGCATCATTTTCACATAGAAACACAGGTTTCTTTGGCTGTTCCACAAGAAGATGGGATAACTGTCTACAGTGCAAGTCAAGGGGCAAGTATGGTGCAGAAAGCAGTCAGCGATTTTTTGGCAATGCCAGCAACAAGTGTTGATGTTATTGTCCGGCGCTGTGGAGGGGCATTTGGTGCAAAAGCCATGCGAGCCAACCAGATAGCTTGCGCTTGCGCACTAGCAGCCAAAGTCCTTGATAGACCCGTGAAGCTCAAGATGAACTTCAATACCAACATGGCGACAGTGGGTGGAAGAGCACCACACTTGACCAAATACAAGGTTGCCTTCAATGAAGAAGGACTCTTACAAGGAATCGAGATGGACTACTGTGTTGATACAGGCTGCACACCGGAGGATAATGACATGATTTGTGCTGGTAGACATTGGGATAATTGTAAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O23887	Indole-3-acetaldehyde oxidase OS=Zea mays OX=4577 GN=AO1 PE=1 SV=1
Q7G193	Indole-3-acetaldehyde oxidase OS=Arabidopsis thaliana OX=3702 GN=AAO1 PE=1 SV=2
Q7G192	Indole-3-acetaldehyde oxidase OS=Arabidopsis thaliana OX=3702 GN=AAO2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001251 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02738 all species →	MoCoBD_1	Molybdopterin cofactor-binding domain	Domain	Interproscan
PF01799 all species →	Fer2_2	[2Fe-2S] binding domain	Domain	Interproscan
PF01315 all species →	Ald_Xan_dh_C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	Domain	Interproscan
PF03450 all species →	CO_deh_flav_C	CO dehydrogenase flavoprotein C-terminal domain	Domain	Interproscan
PF00941 all species →	FAD_binding_5	FAD binding domain in molybdopterin dehydrogenase	Family	Interproscan
PF00111 all species →	Fer2	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008274 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Interproscan
IPR005107 all species →	Domain	CO dehydrogenase flavoprotein, C-terminal	Interproscan
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR037165 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Interproscan
IPR000674 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Interproscan
IPR002888 all species →	Domain	[2Fe-2S]-binding	Interproscan
IPR016208 all species →	Family	Aldehyde oxidase/xanthine dehydrogenase-like	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR002346 all species →	Domain	Molybdopterin dehydrogenase, FAD-binding	Interproscan
IPR036856 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR016167 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 1	Interproscan
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR036884 all species →	Homologous_superfamily	[2Fe-2S]-binding domain superfamily	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR036683 all species →	Homologous_superfamily	CO dehydrogenase flavoprotein, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11908 all species →	XANTHINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00106	XDH; xanthine dehydrogenase/oxidase	EC:1.17.1.4 EC:1.17.3.2	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.