Gene detail

Detailed information of gene23109.t2 in Actinoscyphia liui

Genomic Location: chr6:40421372...40429708
NR annotation: XP_020916520.2, uncharacterized protein LOC110253908 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene23109.t2

ATGCACTTGATTCACTGCCCACGATTTGACTTTAGTCATTATGGTACATGCTTTATTCTTCTTTGCTGCTTGGCCAAATATTCAGTAACCTTGACAACCCAGTGGCCAGCAGGGCAGTATGGTCTTCCTATGCCAGTGTCTGGGTGTCCCAATGCTAATTTTAGTTGGCTGACAGGCTGGAGATATCAGGATACTGAAGACAAGACTCCGTCAAACAGACAATCTGATAGCCTGCACATCGAGGGTTTTGTACGCTCAAGCAGTGTCAATAAATCGTTTTGTATGAAGACAAATATATCACAGGACAGTTCTTTATCGCATGTATGGCCAAATGGGAAATACTGTATTTACAAGAGAGAAGGATATTGCCCCCAAGGCTTACAATCCGGTCTAATAACGTGGGACGATGAAGACAATGAAAATGCAAACAGTTACTCGGGAGAACTCCCTAATGGATACTACCAAGGTTCCAGAACTACCATCCAATACTGCTGCAGCGTGCAAGGCGTCAAGGCAAACCCCATCAGTCTACCAGTCGATACCCCATTCTATCTGTTAGCTTATCACTCGACACAGTGTCAACAAGTCCAGTGGGCGTTGGCTACACAGGAATGGATTCATTACGACACTGAAAACGGTGTAAACTCAGATTCTAAATTAGGTGACTACCCCTTTGGGGCCATGGGTGGAGTCGACGGTCACACCATCCACTACTGTTACTATACAAGTAAGTATGGATACTGTCCATACAGGGCCATGGGTGGGGTCGACGGTCACACCATCCACTACTGTTACTATACAAGCTGTAGATATGTTCTCAACTTTACTTCTGGTACGATCCAGTCTCCTGGTTTCCCCAATAAGTATCCAAATGGTCAGCTCTGCTCGTGGAGGATCACAGTACAATCCGATCGAATCGTTAGTCTACATTTCATGAATTTCTCCATGGCAATGTCTAGCCATGGTGATATGGTAGAGATATACGACGGTAACGATGACAACGCCAAGCTGGTTGGCAGTTACCATGGTGATAGTATACCTGGTGATATTAAGTCGTCGTCTAGTTCTTTGTATTTGGTATTTCGTTCGGATGGTACAGTGAGTGGAAGGGGATTTCAAGCTTATTATGTTGCAGTTGACCCTAAAGGCTGTAGATATGTTCTCAACTTTACTTCTGGTACGATCCAGTCTCCTGGTTTCCCCAATAAGTATCCAAATGGTCAGCTCTGCTCGTGGAGGATCACGGTACAATCCGATCGAATCGTTAGTCTACATTTCATGAATTTCTCCATGGCAACGTCTAGCCGTGGTGATATGGTAGAGATATACGACGGTAACGATGACAACGCCAAGCTGGTTGGCAGTTACCATGGTGATAGTGTACCTGGTGATATTAAGTCGTCGTCTAGTTCTTTGTATTTGGTATTTCGTTCGGATGGTACAGTGAGTGGAAGGGGATTTCAAGCTTATTATGTTGCAGTTGACCCTAAAGAACCCTCGCATCCATGGTCTACTTCCACTCGATCTGAACCAACAACAGAGATCATGAACAATGTTTCAACATCCGAGGGTCCAGTGGTGAAGAAATCTTGTTTGAAAGGATCAACGTCGCCCAGTATTGCTGTAGTTTCTATAGTAGTGCCACTAATCTGTCTCATTGGAACTGCCGTGCTTGTTGCATTCATGTTATATCGATGGAGAACGATTCGCAGTAGAAAAAAGGGTTTGTCAGTCATATACCAAGCCAAAACTACCAGTAATCCATCATACTTTGGTGTTGTGAACACCAATAATCACAACAAGAAAGAAGACGAACTGTCCATAGTAGCATCTAAAGGAGAAGAGAAGGACGACATCTATCAAGAAGTGGGCGAAAAACGAATAACCAATCCATTGTACGACTCGCAAGATGACTTAGCCACAGGGAACCCAATTTACCAACACACCGATACAACGAGTACAAATACGTGTACTCTCTATGACAGTTATTCCATACAATAA

Transcript

gene23109.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60997	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Mus musculus OX=10090 GN=Dmbt1 PE=1 SV=2
O57460	Dorsal-ventral patterning tolloid-like protein 1 OS=Danio rerio OX=7955 GN=tll1 PE=2 SV=1
Q9WVM6	Tolloid-like protein 2 OS=Mus musculus OX=10090 GN=Tll2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000147 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16977 all species →	ApeC	C-terminal domain of apextrin	Family	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR031569 all species →	Domain	Apextrin, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19324 all species →	PERFORIN-LIKE PROTEIN 1	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for gene23109.t2 in Actinoscyphia liui.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23091	KREMEN; kremen protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.