Gene detail

Detailed information of gene23271.t1 in Actinoscyphia liui

Genomic Location: chr6:42726282...42767666
NR annotation: XP_028516630.1, ATP-binding cassette sub-family A member 1 isoform X2 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene23271.t1

ATGAAGGTCTTCGAACAACTCAAACTTCTGGTATGGAAGAACTTTGCACTTCGAAAACGTCAAACGAAGCGAAACATCATTGAGATAGCATGGCCTTTAGTTATATTTCTCATTCTTGTTGCTGTGAGGACAAAAAGGCCACCTTACCAAGTTAACAACTTATACTATCGACCAAGAGCCCTACCATCAGCAGGTCTTCTACCATTCGTACAGTCATTCTTTTGTGACTACAGAGGCCAAGCCTTTAACTACTCAGACATTGTACATCAGGGTAATGAGCTGCCTGATATACAAAATTCAAGTATTGCTAGGTTACTAGAGGATGCTATACCGCTCATTGAAAACAGCACACTTAGAAACAGGCTTCTAAGGCTGAATACTGACTTCCAGAAGTATGTGAGGGACCAACAATATTGGACACAATTAGTACAGGCATATCAGAATGGGACAAATATTACTATGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGTAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGTAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTGTGTGATACTTAGGAATGTTTTAAACGATCCACAAGGCTTTCAGCAGTACCTTATAAATCAGATAGGGCTTTCCCCTCAGATCGCACAAGAGCTTTTGACTGCTAAACTTGACCAACAACAGGTTGATAAATTGTTATCTTTGTCCAGTGCTATTCCCAAGGGTTCCTCCTCCCTTCTACCATTACTCCTTGGCTTGCTACCTGCTACTGCTAGTTCTCGAAAACAGCAGTTAGAATGGTTTATGAAAATCCTTCAACCACTTTCACAGAACCAAAGACTAACAGCTGCGCAAATCAAAGACTTTGCTTGTGAACCTGGTTCCCCTGTAGCAATTGAAAAGATTGTCAAGCTTTCTCAAGGAAACATAACTGAAGTCAAGTCTGCACTTTGTTCACTGGACAATGCCAAGTTACAAAATCTGACTGCAGAACTGAGAAGACAGATCAAGATGCCTTCAAACCTGCCAAATACAACAACACTGCTTAAACAGAGTAAAGTTTTGCAAAGTTTGATGAAGGATGCTCAAAATCTTTACGAGGATAGCCTTGCATTACTTCCCATTGAACATGTCATCAGTGACTATGTACTCATAATGCAGAACATGCGTGGTACTCCAGACTTTAATAACATACTATGCAGTGGACGTTGGAAGACTAAGCCTAACACCACTTGGAGTAAACGACCAGGAATTTCTAATATGGGTGGTATAAGTGGAGCTGTTGCTGATTTTCTTCGGCCCAACAAGCAACATCAAAGCAAAAAATATAATATTACACGCCCATATGCTGGATTCGATAACTGTACCTACAAACTGCAAGCATACTCTGAGTATATGAACCTGATGAAGAACAAAACAGCTATGAAACTTGAAGGTCGAGATAAGTGTTCAGTGATTGATCCTAAGAACAGAATTGACTGTGGTTGGCCTGGTATGTCACCCTCACAGTGCTCACAGATTGGCTGCTGTTTTGACTCCTCCATTAAGGGTGCTCATTACTGCTTCTACGAACCCAAGGAAGCGCAGTGTGGATGTATACTAGGCACTGCCTCACAGTCCATTTCTGGTGCATCTGACAAGACTCAAAGACCAGCTTATGACAGAGGTTTTGTACAACTATCTCAGTTATTCCTTCATGGTGAAATCCTCTACACACCAGATAATCCAACGACTAGGAAGATCATTAGTAAGATTAAGGGTGAAGTGTCAGATATTGGCCTGATTGAACAGTTTGCCACCTGGTGGATTAACAACTCTGATACTCTACGATCCAACCTTGAGAATGCCTCAAGTATTTACAGAACCTTTCTCAATGCACAACCTGCCAATCAGAGTCCTACAAATCTTCTGGCATGGTTGCAAATATACAATATATCTGATTTTGTCCGACTGGAGAATTTGTTCAATAATTCTGCAATACAGTATCTCATGGCAAACATAAATGGCACCCAAAATATCAGTACAGTTATTGACAATCTGGACGGGATGTTTAAGAGTTTTAGGGATACTTTTCGCTGCTTTAATCATGAGTATTTTCGTGGATATCCAAATGAAGATTCATTGATTCGTCGAGCTTTGAATACATCTCGTGCTCCCGTGATTGCAAGTCTTGTGTTTGAAAACGTCAATGAGAACTCTATACCTAACCATGTGAAGTACACGATACGACAAGATGTTGATTTCACGCCAAGGACTGACAGAATACGCGGATGGTATTGGCGTCCAGGACCACGGGATGGCTTTACCAAAAATGGCTATTTAAATTTTGGTTTTCTTTTCCTGCAAGACTTAATAGACCGAGCATTGATGAGTATGATTCTTAACGAGACCGTATACGAGCCAGGAGTTTATGTGCAACAGTTTCCATATCCTTGCTACATCAGAGATACGTTTGTGTGGTACATTGGTGGACCAATGCCTTTACTCATGACACTAGCCTGGGTATACAGCGTAGCTATGATTATAAAGGGAATTGTTTATGAGAAAGAGAAGAAACTTAAGGAAGTCATGAAGGTGATGGGTCTTGGTCGTATCATCCACTGGGTTGCATGGTTTATTAACAGCTCCATATTAATGCTCATCAGCATCATAATGCTTGTCATCACCATGAAATATGGTCTTATTTTAGCAAACAGCAATGCCTTCATAGTGTTTATCTTCCTGGTGGTTTTTATGATATCTACAATCATGATGTGCTTCTTGATTAGTGTCTTCTTCTCACGAGCTAACGTGGCTGCGGCATGTGGTGGGATTATCTTCTTTATGACGTATCTGCCATACTCTTTGGTAAGGTGGTTTGAGGCATTCATGACGACAAGTCAAAAAGCGGTTACGTGTCTGTCGTCCACTACTGCATTTGGATTAGCATGTAGTTACTTTGCACGCTACGAGGAGCAGGGAACAGGCATCCAGTGGGATAATCTGTTTTCTAGTCCCATAGAAGGTGATGGTTTTAGTCTTGGTTATACGTTATCTATGATGTTGGTGGATGCTGTATTGTATGGGATAATCACTTGGTACCTGGAAGCTGTCATGCCTGGTCAATATGGTATTGCTAGACCTTGGTATTTCCCATTCCTCAAGTCTTATTGGTTCCCTAAACGATATCAAAACATCAATCAAGCTCGCTACCAGAACAGTACCACCAGTAGACCAACACCTGGTATAGGGATGACAGATGGACCAATGGCTCATGGTATGGATGAAGTCACGTTTCAAGCTGAAGGACAAGAAGGCAACAAGGACATTGCTATAGAGAGTGAACCAACACACTTGCCACTTGGTGTTTCTGTAAAAAACCTGGTTAAGATTTACAAGGAGGGTGGGACGGTAGCCGTCGATGGTCTAAACCTGAATCTCTATGAGGGTCAAATCACGTCCTTCCTGGGTCACAATGGTGCAGGGAAAACCACTACAATGTACATCCTTACTGGCCTATACGCCCCAACATCTGGTACCGCTATCATCAGTGGCTTGGACATACGTAAAGATGTAGACTTGGTGAGGAAGAGTCTTGGTATGTGCCCACAGCACAATGTGTTGTTTGACCAGCTGACTGTCGAAGAGCATCTATGGTTTTATTCATCGCTTAAAGGCATGGAGAAGTCGAAAATACCACAAGAGATTGAAAAGTTTCTCAGCGATATTGGTCTAGAAAACAAGAGAAACGAGATTGCTGCCAATCTCTCTGGAGGCATGAAGCGCAAATTGTCCGTTGGCATGGCCTTTATTGCAGGGTCTAAAGTGGTCATCCTAGATGAGCCCACTGCTGGAGTGGACCCTTATGCCCGTAGAGGTATCTGGGATTTATTGCTCAAGTACAAACCAGGTCGCACAGTTCTGTTATCCACACATCACATGGATGAGGCTGATATACTGGGTGATCGTATCGCTATCATCTCTCATGGAAAACTGCAATGCTGTGGCTCCTCATTGTTCCTGAAGGGACATTATGGTAATGGCTACTACCTAACACTCACTAAAAGGTCCCCTGAAGACAGACCTACTACAGCTGGTACCTTGAGGGACATTAAACTCAGACTTGAAAATGTTACGGAGTCCAGCTCATCTGATGAAGGTGTCTTCCTGGACTCAGTGGACGCTTCTGAACGTGATAGCCAGGGTTCTAGTGCCAGTAGTTCAGACACCCTTCCAACAGGCAACGATTCAGACTTGCACTGCAGCGAAAGCACTGTGACCTCATTCATCAAGACACACATCCCCACCGCCCAGCTTGTGGAGCATGTAGGATCAGAACTCACCTACGTACTCCCTACAGAGGCTGCCAAAGAAGGAAAATTTCAAGACATGTTTGAATCCCTTGATAGAAACCTAGGAAAACTTCGTGTTGGTAGTTATGGTGTATCAGATACAACTCTTGAGGAGGTTTTCCTTAAAGTTGCGGAAGAATCCATAGACGAAAGTGCAGATAAATTCGCTGCTGAGGTTCCAAAACGTCGTTTTAGTTTCCGTCATCATCTTTTCTCACGATCTCGAATTGATTCAGATGATGTTGACTTACTGGAAAATATGGAAGAAGAAAAAGATGATGAACTTGAAGACACAGACGATGTCATTGATGGTAGCTGCGATCGCAAATCCACTGGCTTACACCTCCTCTTCAGGCAATTCTGGGCTCTTGTCGTCAAGAGATTCCATCACACACGAAGAAACAAAAAAGCCTTTGCTTCACAGATTATCCTTCCTGCGATATTTGTTTGCATTGCTATGATTGTGGCTCAAATCCGTCCATTTTATGAGATGCCACCAATTCTGCTCTCAACTAAGATGTTCCAGGATAGCTTACCGCATGACCAGTATATGGTGTTTTCTAATAATAATCCAAATGATCCCTTGGCTAAGAACTTGACTGACACGTTTCTTCATTATCCTGGAGTAGGTGTAACCTGCATGGACCATTCTTGTCCAAGAGATCCCATTACCTTCAAGGGACCCATGTCACACCCCTCCAATTCTTCTCCAGACTGTTCGTGTTCATCAGGAATACCAGAGTGTCCCGCTGGGGCAGGGGGTCCACCACCAAGAGAATGGAATTCATATTCTGGAGATATTTTACAGAATATGACAGGAAGAAACATCTCAGGCCATCTTTTGAAGACCTACAAGGAGTTTATAAAGAGAAGATATGGTGGCGTGACATTTGGCGACAACGTTCGTAACCTTCCTCTTGACTTCGCAATGTCACAAGATCCTGTAGTGAAACGACTGATCTCCCCGCGAAACACCAAAGCTTGGTACAATAACAATGGCTATCACGCTATGCCGACATACTTGAACATCTTGTCCAATAACATTCTGAGAAACAAAGCTAAAGCCAAAGGATACGATCCAGCAGATTTTGGAATATCTGTCACGAATCACCCCATGAACTATACCAAGGAACAACTTGGAGATCAGACATTGATTAAACAAGCAGTAGATGTTCTAGTAGCCATCTGTGTGGTGTTTGCTCTATCATTCGTACCTGCCAGTTTCGTGTTGTTCTTAGTCAATGAACGAACTACTAAAGCCAAACACTTACACATGGTCAGTGGTGTTCGCCCATACATTTACTGGATTGCCAACTACTTCTGGGATATGTGTAACTACTTCATTCCTGCGATGTTATGTGTTCTGATATTCCTGTGTTTCAACGATGAATCCTACACCTCCGCATCAAATTTCCCGCCAACACTTTGTCTTTTGCTGTTATACGGGTGGGCCATTACGCCACTAATGTATCCTGCATCCTATGTATTCTCTGTGCCCAGTACTGCCTACATTGTACTTATCTGTGCCAACCTGTTTATTGGAGTTAACTGCACCATAGCAACGTTCATTCTTGAGATGTTCCATGACGACCAGGAACTTGCAGACATTAATGACTGGCTTAAAGTTATTTTCCTTGCCTTCCCTAACTACTGTCTTGGACGTGGACTTATTGACCTGGCGAAAAACCAATTTTTAAGCATATTTAACAGATTTGGGCAAAACTTAGTGAGAGACCCATTCAGTTGGGACATAACAGGGCGTAACATCTTCGCTATGATCATCCAAGGCTTTGTGTTCTTTTCTATCAATGTCCTCATTCAGTACCGATTCTTCATCAAACAAAGACCCACGAAAAATACTCCCCACGCTCTCGCGGAAGAAGATGACGACGTGAAGCGTGAAAGACAACGCGTTGTCAGTGGAACTGGCAGCTCTACTGACGCTATAAGAATTGTTAACTTGACCAAGGTCTACAATGTAAGGAAGAAAAACAACCTTGCTGTTAATCAACTTTGTGTAGGAGTCTCCAAAGGAGAGTGTTTTGGTTTACTTGGAGTCAATGGTGCTGGCAAGACCACTACATTTGAGATGTTAACTGGAGATATCTCAGTGACTTCAGGAGAAGCTTACGTTAATGGCTATAGTATCTTGTCAGAGATCCACAAAGCTCGTCTGACCATGGGTTACTGCCCACAGTTTGATGGTTTGGATGATCTACTGACTGCACAGGAACATCTTTACTTGTATGCAAGACTAAGAGGTGTTCCAGAAGTGGATATCAAACATGTTGTCAAGACACTCGTCCACAAAATGAACCTGACGCAGTACCAAGATGTCTGTGCAGGCAAATACAGTGGTGGTAACAAAAGAAAACTTTCTACTGCAATAGCACTAGTTGGAAATCCAGATATTATCTTCATGGATGAACCGACTACTGGTATGGATCCCAGAGCAAGGCGCTTCTTGTGGAACATCATAACGTCCATTGTCAAGGAGGGTCGCACTGTTGTTCTCACCTCTCACAGCATGGAGGAATGTGAAGCCCTTTGTAACAGAGTAGCAATCATGGTCAATGGTCAGTTCAAGTGTCTTGGAAGTCCTCAGCATCTAAAGACTAAATATGGAGAGGGATACACTATTGTGTTAAAAGTGGCTGGACCCAATCCCGAAACAGAGCAGGTCTCAGAATTTATCAAAACAATATTTCCAAATGCTGTCCTCAAGGATAAACATCTAAACATGTTGGAATATCAGCTGCCATCTCGAGGGCTGTCAGTAGCCAATGTGTTTGGTCATTTGGAAGCAAATCGCAAGATCTTTAACATTGAAGATTACTCAGTATCACAGACAACACTAGATCAGGTGTTCATCAACTTTGCAAAGGAACAGACTGATGGTATGGATGACACAGAAACCAGGGATCAACCAGGGAATAACTTAGAGTTATCCACAATGCGCTACGCCCACTTGATTGATGGAACCGAACCAGATGAACCTATTAATGTCTAA

Transcript

gene23271.t1

CTTCGGTAATATTTTTTTTATTAATATAGACCAAAAATAACATTATTTGATATTTTTATATGAGAAATAAATTTTGTTGAATACATGTACTATTTTGTATATTTTGATGTTAATATTATCATTAGGATGACCCCCACGGGTTGTTTTTTTGCTGTTTGATGATTGACAACTTTTTCCGTCTCCATGAATTGAATGGGTCGAACAGGATGCATCATAATTCAAGGTTTTATGCACATGACACTGTTTTCTTATTTCACCTCAAGAACAACTTCCTGATGTGATAAAGGACCCTTCATTTAACAATCGCCTGGACGTAAAACACATCATTCGTTGGTTGCTTCTCCTTGAAAACCAATCGAAAACGTCACACTATATCAGCTGCCAGCTTGTCTTTTGCTCACATCCGCACGCAGTCTTCGCAAACCGGACAACTGGTATTCCTTGAACGCTTCTTCGCATTAAATCTCTAACTTACATTGTATATACTACGAGGGGACGATATGTTTTGAAGATCGAGGCATAATTCATCGATAGACGGCCGTGCAGAAATGAAGGTCTTCGAACAACTCAAACTTCTGGTATGGAAGAACTTTGCACTTCGAAAACGTCAAACGAAGCGAAACATCATTGAGATAGCATGGCCTTTAGTTATATTTCTCATTCTTGTTGCTGTGAGGACAAAAAGGCCACCTTACCAAGTTAACAACTTATACTATCGACCAAGAGCCCTACCATCAGCAGGTCTTCTACCATTCGTACAGTCATTCTTTTGTGACTACAGAGGCCAAGCCTTTAACTACTCAGACATTGTACATCAGGGTAATGAGCTGCCTGATATACAAAATTCAAGTATTGCTAGGTTACTAGAGGATGCTATACCGCTCATTGAAAACAGCACACTTAGAAACAGGCTTCTAAGGCTGAATACTGACTTCCAGAAGTATGTGAGGGACCAACAATATTGGACACAATTAGTACAGGCATATCAGAATGGGACAAATATTACTATGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGTAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGTAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTACAGTGCAGTGGGCAAGGTGTGTGTGATACTTAGGAATGTTTTAAACGATCCACAAGGCTTTCAGCAGTACCTTATAAATCAGATAGGGCTTTCCCCTCAGATCGCACAAGAGCTTTTGACTGCTAAACTTGACCAACAACAGGTTGATAAATTGTTATCTTTGTCCAGTGCTATTCCCAAGGGTTCCTCCTCCCTTCTACCATTACTCCTTGGCTTGCTACCTGCTACTGCTAGTTCTCGAAAACAGCAGTTAGAATGGTTTATGAAAATCCTTCAACCACTTTCACAGAACCAAAGACTAACAGCTGCGCAAATCAAAGACTTTGCTTGTGAACCTGGTTCCCCTGTAGCAATTGAAAAGATTGTCAAGCTTTCTCAAGGAAACATAACTGAAGTCAAGTCTGCACTTTGTTCACTGGACAATGCCAAGTTACAAAATCTGACTGCAGAACTGAGAAGACAGATCAAGATGCCTTCAAACCTGCCAAATACAACAACACTGCTTAAACAGAGTAAAGTTTTGCAAAGTTTGATGAAGGATGCTCAAAATCTTTACGAGGATAGCCTTGCATTACTTCCCATTGAACATGTCATCAGTGACTATGTACTCATAATGCAGAACATGCGTGGTACTCCAGACTTTAATAACATACTATGCAGTGGACGTTGGAAGACTAAGCCTAACACCACTTGGAGTAAACGACCAGGAATTTCTAATATGGGTGGTATAAGTGGAGCTGTTGCTGATTTTCTTCGGCCCAACAAGCAACATCAAAGCAAAAAATATAATATTACACGCCCATATGCTGGATTCGATAACTGTACCTACAAACTGCAAGCATACTCTGAGTATATGAACCTGATGAAGAACAAAACAGCTATGAAACTTGAAGGTCGAGATAAGTGTTCAGTGATTGATCCTAAGAACAGAATTGACTGTGGTTGGCCTGGTATGTCACCCTCACAGTGCTCACAGATTGGCTGCTGTTTTGACTCCTCCATTAAGGGTGCTCATTACTGCTTCTACGAACCCAAGGAAGCGCAGTGTGGATGTATACTAGGCACTGCCTCACAGTCCATTTCTGGTGCATCTGACAAGACTCAAAGACCAGCTTATGACAGAGGTTTTGTACAACTATCTCAGTTATTCCTTCATGGTGAAATCCTCTACACACCAGATAATCCAACGACTAGGAAGATCATTAGTAAGATTAAGGGTGAAGTGTCAGATATTGGCCTGATTGAACAGTTTGCCACCTGGTGGATTAACAACTCTGATACTCTACGATCCAACCTTGAGAATGCCTCAAGTATTTACAGAACCTTTCTCAATGCACAACCTGCCAATCAGAGTCCTACAAATCTTCTGGCATGGTTGCAAATATACAATATATCTGATTTTGTCCGACTGGAGAATTTGTTCAATAATTCTGCAATACAGTATCTCATGGCAAACATAAATGGCACCCAAAATATCAGTACAGTTATTGACAATCTGGACGGGATGTTTAAGAGTTTTAGGGATACTTTTCGCTGCTTTAATCATGAGTATTTTCGTGGATATCCAAATGAAGATTCATTGATTCGTCGAGCTTTGAATACATCTCGTGCTCCCGTGATTGCAAGTCTTGTGTTTGAAAACGTCAATGAGAACTCTATACCTAACCATGTGAAGTACACGATACGACAAGATGTTGATTTCACGCCAAGGACTGACAGAATACGCGGATGGTATTGGCGTCCAGGACCACGGGATGGCTTTACCAAAAATGGCTATTTAAATTTTGGTTTTCTTTTCCTGCAAGACTTAATAGACCGAGCATTGATGAGTATGATTCTTAACGAGACCGTATACGAGCCAGGAGTTTATGTGCAACAGTTTCCATATCCTTGCTACATCAGAGATACGTTTGTGTGGTACATTGGTGGACCAATGCCTTTACTCATGACACTAGCCTGGGTATACAGCGTAGCTATGATTATAAAGGGAATTGTTTATGAGAAAGAGAAGAAACTTAAGGAAGTCATGAAGGTGATGGGTCTTGGTCGTATCATCCACTGGGTTGCATGGTTTATTAACAGCTCCATATTAATGCTCATCAGCATCATAATGCTTGTCATCACCATGAAATATGGTCTTATTTTAGCAAACAGCAATGCCTTCATAGTGTTTATCTTCCTGGTGGTTTTTATGATATCTACAATCATGATGTGCTTCTTGATTAGTGTCTTCTTCTCACGAGCTAACGTGGCTGCGGCATGTGGTGGGATTATCTTCTTTATGACGTATCTGCCATACTCTTTGGTAAGGTGGTTTGAGGCATTCATGACGACAAGTCAAAAAGCGGTTACGTGTCTGTCGTCCACTACTGCATTTGGATTAGCATGTAGTTACTTTGCACGCTACGAGGAGCAGGGAACAGGCATCCAGTGGGATAATCTGTTTTCTAGTCCCATAGAAGGTGATGGTTTTAGTCTTGGTTATACGTTATCTATGATGTTGGTGGATGCTGTATTGTATGGGATAATCACTTGGTACCTGGAAGCTGTCATGCCTGGTCAATATGGTATTGCTAGACCTTGGTATTTCCCATTCCTCAAGTCTTATTGGTTCCCTAAACGATATCAAAACATCAATCAAGCTCGCTACCAGAACAGTACCACCAGTAGACCAACACCTGGTATAGGGATGACAGATGGACCAATGGCTCATGGTATGGATGAAGTCACGTTTCAAGCTGAAGGACAAGAAGGCAACAAGGACATTGCTATAGAGAGTGAACCAACACACTTGCCACTTGGTGTTTCTGTAAAAAACCTGGTTAAGATTTACAAGGAGGGTGGGACGGTAGCCGTCGATGGTCTAAACCTGAATCTCTATGAGGGTCAAATCACGTCCTTCCTGGGTCACAATGGTGCAGGGAAAACCACTACAATGTACATCCTTACTGGCCTATACGCCCCAACATCTGGTACCGCTATCATCAGTGGCTTGGACATACGTAAAGATGTAGACTTGGTGAGGAAGAGTCTTGGTATGTGCCCACAGCACAATGTGTTGTTTGACCAGCTGACTGTCGAAGAGCATCTATGGTTTTATTCATCGCTTAAAGGCATGGAGAAGTCGAAAATACCACAAGAGATTGAAAAGTTTCTCAGCGATATTGGTCTAGAAAACAAGAGAAACGAGATTGCTGCCAATCTCTCTGGAGGCATGAAGCGCAAATTGTCCGTTGGCATGGCCTTTATTGCAGGGTCTAAAGTGGTCATCCTAGATGAGCCCACTGCTGGAGTGGACCCTTATGCCCGTAGAGGTATCTGGGATTTATTGCTCAAGTACAAACCAGGTCGCACAGTTCTGTTATCCACACATCACATGGATGAGGCTGATATACTGGGTGATCGTATCGCTATCATCTCTCATGGAAAACTGCAATGCTGTGGCTCCTCATTGTTCCTGAAGGGACATTATGGTAATGGCTACTACCTAACACTCACTAAAAGGTCCCCTGAAGACAGACCTACTACAGCTGGTACCTTGAGGGACATTAAACTCAGACTTGAAAATGTTACGGAGTCCAGCTCATCTGATGAAGGTGTCTTCCTGGACTCAGTGGACGCTTCTGAACGTGATAGCCAGGGTTCTAGTGCCAGTAGTTCAGACACCCTTCCAACAGGCAACGATTCAGACTTGCACTGCAGCGAAAGCACTGTGACCTCATTCATCAAGACACACATCCCCACCGCCCAGCTTGTGGAGCATGTAGGATCAGAACTCACCTACGTACTCCCTACAGAGGCTGCCAAAGAAGGAAAATTTCAAGACATGTTTGAATCCCTTGATAGAAACCTAGGAAAACTTCGTGTTGGTAGTTATGGTGTATCAGATACAACTCTTGAGGAGGTTTTCCTTAAAGTTGCGGAAGAATCCATAGACGAAAGTGCAGATAAATTCGCTGCTGAGGTTCCAAAACGTCGTTTTAGTTTCCGTCATCATCTTTTCTCACGATCTCGAATTGATTCAGATGATGTTGACTTACTGGAAAATATGGAAGAAGAAAAAGATGATGAACTTGAAGACACAGACGATGTCATTGATGGTAGCTGCGATCGCAAATCCACTGGCTTACACCTCCTCTTCAGGCAATTCTGGGCTCTTGTCGTCAAGAGATTCCATCACACACGAAGAAACAAAAAAGCCTTTGCTTCACAGATTATCCTTCCTGCGATATTTGTTTGCATTGCTATGATTGTGGCTCAAATCCGTCCATTTTATGAGATGCCACCAATTCTGCTCTCAACTAAGATGTTCCAGGATAGCTTACCGCATGACCAGTATATGGTGTTTTCTAATAATAATCCAAATGATCCCTTGGCTAAGAACTTGACTGACACGTTTCTTCATTATCCTGGAGTAGGTGTAACCTGCATGGACCATTCTTGTCCAAGAGATCCCATTACCTTCAAGGGACCCATGTCACACCCCTCCAATTCTTCTCCAGACTGTTCGTGTTCATCAGGAATACCAGAGTGTCCCGCTGGGGCAGGGGGTCCACCACCAAGAGAATGGAATTCATATTCTGGAGATATTTTACAGAATATGACAGGAAGAAACATCTCAGGCCATCTTTTGAAGACCTACAAGGAGTTTATAAAGAGAAGATATGGTGGCGTGACATTTGGCGACAACGTTCGTAACCTTCCTCTTGACTTCGCAATGTCACAAGATCCTGTAGTGAAACGACTGATCTCCCCGCGAAACACCAAAGCTTGGTACAATAACAATGGCTATCACGCTATGCCGACATACTTGAACATCTTGTCCAATAACATTCTGAGAAACAAAGCTAAAGCCAAAGGATACGATCCAGCAGATTTTGGAATATCTGTCACGAATCACCCCATGAACTATACCAAGGAACAACTTGGAGATCAGACATTGATTAAACAAGCAGTAGATGTTCTAGTAGCCATCTGTGTGGTGTTTGCTCTATCATTCGTACCTGCCAGTTTCGTGTTGTTCTTAGTCAATGAACGAACTACTAAAGCCAAACACTTACACATGGTCAGTGGTGTTCGCCCATACATTTACTGGATTGCCAACTACTTCTGGGATATGTGTAACTACTTCATTCCTGCGATGTTATGTGTTCTGATATTCCTGTGTTTCAACGATGAATCCTACACCTCCGCATCAAATTTCCCGCCAACACTTTGTCTTTTGCTGTTATACGGGTGGGCCATTACGCCACTAATGTATCCTGCATCCTATGTATTCTCTGTGCCCAGTACTGCCTACATTGTACTTATCTGTGCCAACCTGTTTATTGGAGTTAACTGCACCATAGCAACGTTCATTCTTGAGATGTTCCATGACGACCAGGAACTTGCAGACATTAATGACTGGCTTAAAGTTATTTTCCTTGCCTTCCCTAACTACTGTCTTGGACGTGGACTTATTGACCTGGCGAAAAACCAATTTTTAAGCATATTTAACAGATTTGGGCAAAACTTAGTGAGAGACCCATTCAGTTGGGACATAACAGGGCGTAACATCTTCGCTATGATCATCCAAGGCTTTGTGTTCTTTTCTATCAATGTCCTCATTCAGTACCGATTCTTCATCAAACAAAGACCCACGAAAAATACTCCCCACGCTCTCGCGGAAGAAGATGACGACGTGAAGCGTGAAAGACAACGCGTTGTCAGTGGAACTGGCAGCTCTACTGACGCTATAAGAATTGTTAACTTGACCAAGGTCTACAATGTAAGGAAGAAAAACAACCTTGCTGTTAATCAACTTTGTGTAGGAGTCTCCAAAGGAGAGTGTTTTGGTTTACTTGGAGTCAATGGTGCTGGCAAGACCACTACATTTGAGATGTTAACTGGAGATATCTCAGTGACTTCAGGAGAAGCTTACGTTAATGGCTATAGTATCTTGTCAGAGATCCACAAAGCTCGTCTGACCATGGGTTACTGCCCACAGTTTGATGGTTTGGATGATCTACTGACTGCACAGGAACATCTTTACTTGTATGCAAGACTAAGAGGTGTTCCAGAAGTGGATATCAAACATGTTGTCAAGACACTCGTCCACAAAATGAACCTGACGCAGTACCAAGATGTCTGTGCAGGCAAATACAGTGGTGGTAACAAAAGAAAACTTTCTACTGCAATAGCACTAGTTGGAAATCCAGATATTATCTTCATGGATGAACCGACTACTGGTATGGATCCCAGAGCAAGGCGCTTCTTGTGGAACATCATAACGTCCATTGTCAAGGAGGGTCGCACTGTTGTTCTCACCTCTCACAGCATGGAGGAATGTGAAGCCCTTTGTAACAGAGTAGCAATCATGGTCAATGGTCAGTTCAAGTGTCTTGGAAGTCCTCAGCATCTAAAGACTAAATATGGAGAGGGATACACTATTGTGTTAAAAGTGGCTGGACCCAATCCCGAAACAGAGCAGGTCTCAGAATTTATCAAAACAATATTTCCAAATGCTGTCCTCAAGGATAAACATCTAAACATGTTGGAATATCAGCTGCCATCTCGAGGGCTGTCAGTAGCCAATGTGTTTGGTCATTTGGAAGCAAATCGCAAGATCTTTAACATTGAAGATTACTCAGTATCACAGACAACACTAGATCAGGTGTTCATCAACTTTGCAAAGGAACAGACTGATGGTATGGATGACACAGAAACCAGGGATCAACCAGGGAATAACTTAGAGTTATCCACAATGCGCTACGCCCACTTGATTGATGGAACCGAACCAGATGAACCTATTAATGTCTAAAGTACACCCACCATCTTATCTACACCCACTTGACTGATGGAACCGAAAACCAGATGAACCTATTAACGTCTAAAGTACACCCACCATCTTATCTACACCCACTTGACTGATGGAACCGAAAACCAGATGAACCTATTAACGTCTAAAGTACACCCACCATCTTATCTACACCCACTTGACTGATGGAACCGAAAACCAGATGAACCTATTAACGTCTAAAGTACACCCACCATCTTATATATATTATCATATATATATATATATATACCAAATTGAATAATCGTGGTCGAGTTATAAAACATTAATCATAGATGGTGC

Protein

gene23271.t1

MKVFEQLKLLVWKNFALRKRQTKRNIIEIAWPLVIFLILVAVRTKRPPYQVNNLYYRPRALPSAGLLPFVQSFFCDYRGQAFNYSDIVHQGNELPDIQNSSIARLLEDAIPLIENSTLRNRLLRLNTDFQKYVRDQQYWTQLVQAYQNGTNITMGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVYSAVGKVCVILRNVLNDPQGFQQYLINQIGLSPQIAQELLTAKLDQQQVDKLLSLSSAIPKGSSSLLPLLLGLLPATASSRKQQLEWFMKILQPLSQNQRLTAAQIKDFACEPGSPVAIEKIVKLSQGNITEVKSALCSLDNAKLQNLTAELRRQIKMPSNLPNTTTLLKQSKVLQSLMKDAQNLYEDSLALLPIEHVISDYVLIMQNMRGTPDFNNILCSGRWKTKPNTTWSKRPGISNMGGISGAVADFLRPNKQHQSKKYNITRPYAGFDNCTYKLQAYSEYMNLMKNKTAMKLEGRDKCSVIDPKNRIDCGWPGMSPSQCSQIGCCFDSSIKGAHYCFYEPKEAQCGCILGTASQSISGASDKTQRPAYDRGFVQLSQLFLHGEILYTPDNPTTRKIISKIKGEVSDIGLIEQFATWWINNSDTLRSNLENASSIYRTFLNAQPANQSPTNLLAWLQIYNISDFVRLENLFNNSAIQYLMANINGTQNISTVIDNLDGMFKSFRDTFRCFNHEYFRGYPNEDSLIRRALNTSRAPVIASLVFENVNENSIPNHVKYTIRQDVDFTPRTDRIRGWYWRPGPRDGFTKNGYLNFGFLFLQDLIDRALMSMILNETVYEPGVYVQQFPYPCYIRDTFVWYIGGPMPLLMTLAWVYSVAMIIKGIVYEKEKKLKEVMKVMGLGRIIHWVAWFINSSILMLISIIMLVITMKYGLILANSNAFIVFIFLVVFMISTIMMCFLISVFFSRANVAAACGGIIFFMTYLPYSLVRWFEAFMTTSQKAVTCLSSTTAFGLACSYFARYEEQGTGIQWDNLFSSPIEGDGFSLGYTLSMMLVDAVLYGIITWYLEAVMPGQYGIARPWYFPFLKSYWFPKRYQNINQARYQNSTTSRPTPGIGMTDGPMAHGMDEVTFQAEGQEGNKDIAIESEPTHLPLGVSVKNLVKIYKEGGTVAVDGLNLNLYEGQITSFLGHNGAGKTTTMYILTGLYAPTSGTAIISGLDIRKDVDLVRKSLGMCPQHNVLFDQLTVEEHLWFYSSLKGMEKSKIPQEIEKFLSDIGLENKRNEIAANLSGGMKRKLSVGMAFIAGSKVVILDEPTAGVDPYARRGIWDLLLKYKPGRTVLLSTHHMDEADILGDRIAIISHGKLQCCGSSLFLKGHYGNGYYLTLTKRSPEDRPTTAGTLRDIKLRLENVTESSSSDEGVFLDSVDASERDSQGSSASSSDTLPTGNDSDLHCSESTVTSFIKTHIPTAQLVEHVGSELTYVLPTEAAKEGKFQDMFESLDRNLGKLRVGSYGVSDTTLEEVFLKVAEESIDESADKFAAEVPKRRFSFRHHLFSRSRIDSDDVDLLENMEEEKDDELEDTDDVIDGSCDRKSTGLHLLFRQFWALVVKRFHHTRRNKKAFASQIILPAIFVCIAMIVAQIRPFYEMPPILLSTKMFQDSLPHDQYMVFSNNNPNDPLAKNLTDTFLHYPGVGVTCMDHSCPRDPITFKGPMSHPSNSSPDCSCSSGIPECPAGAGGPPPREWNSYSGDILQNMTGRNISGHLLKTYKEFIKRRYGGVTFGDNVRNLPLDFAMSQDPVVKRLISPRNTKAWYNNNGYHAMPTYLNILSNNILRNKAKAKGYDPADFGISVTNHPMNYTKEQLGDQTLIKQAVDVLVAICVVFALSFVPASFVLFLVNERTTKAKHLHMVSGVRPYIYWIANYFWDMCNYFIPAMLCVLIFLCFNDESYTSASNFPPTLCLLLLYGWAITPLMYPASYVFSVPSTAYIVLICANLFIGVNCTIATFILEMFHDDQELADINDWLKVIFLAFPNYCLGRGLIDLAKNQFLSIFNRFGQNLVRDPFSWDITGRNIFAMIIQGFVFFSINVLIQYRFFIKQRPTKNTPHALAEEDDDVKRERQRVVSGTGSSTDAIRIVNLTKVYNVRKKNNLAVNQLCVGVSKGECFGLLGVNGAGKTTTFEMLTGDISVTSGEAYVNGYSILSEIHKARLTMGYCPQFDGLDDLLTAQEHLYLYARLRGVPEVDIKHVVKTLVHKMNLTQYQDVCAGKYSGGNKRKLSTAIALVGNPDIIFMDEPTTGMDPRARRFLWNIITSIVKEGRTVVLTSHSMEECEALCNRVAIMVNGQFKCLGSPQHLKTKYGEGYTIVLKVAGPNPETEQVSEFIKTIFPNAVLKDKHLNMLEYQLPSRGLSVANVFGHLEANRKIFNIEDYSVSQTTLDQVFINFAKEQTDGMDDTETRDQPGNNLELSTMRYAHLIDGTEPDEPINV

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P41233	Phospholipid-transporting ATPase ABCA1 OS=Mus musculus OX=10090 GN=Abca1 PE=1 SV=4
O95477	Phospholipid-transporting ATPase ABCA1 OS=Homo sapiens OX=9606 GN=ABCA1 PE=1 SV=3
Q9BZC7	ATP-binding cassette sub-family A member 2 OS=Homo sapiens OX=9606 GN=ABCA2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000301 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12698 all species →	ABC2_membrane_3	ABC-2 family transporter protein	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF00088 all species →	Trefoil	Trefoil (P-type) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044913 all species →	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan
IPR013525 all species →	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR026082 all species →	Family	ABC transporter A	Interproscan
IPR000519 all species →	Domain	P-type trefoil domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR017994 all species →	Family	P-type trefoil, chordata	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19229 all species →	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005319 all species →	Molecular Function	lipid transporter activity	Interproscan
GO:0006869 all species →	Biological Process	lipid transport	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05641	ABCA1; ATP-binding cassette, subfamily A (ABC1), member 1	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinoscyphia liui tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinoscyphia liui, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →