Gene detail

Detailed information of gene23328.t1 in Actinoscyphia liui

Genomic Location: chr6:43624792...43633065
NR annotation: XP_020915737.1, phenylalanine--tRNA ligase alpha subunit [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1JPX3	Phenylalanine--tRNA ligase alpha subunit OS=Danio rerio OX=7955 GN=farsa PE=2 SV=2
Q505J8	Phenylalanine--tRNA ligase alpha subunit OS=Rattus norvegicus OX=10116 GN=Farsa PE=1 SV=1
Q6AZG6	Phenylalanine--tRNA ligase alpha subunit A OS=Xenopus laevis OX=8355 GN=farsa-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004071 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01409 all species →	tRNA-synt_2d	tRNA synthetases class II core domain (F)	Domain	Interproscan
PF18553 all species →	PheRS_DBD3	PheRS DNA binding domain 3	Domain	Interproscan
PF18554 all species →	PheRS_DBD2	PheRS DNA binding domain 2	Domain	Interproscan
PF18552 all species →	PheRS_DBD1	PheRS DNA binding domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR002319 all species →	Domain	Phenylalanyl-tRNA synthetase	Interproscan
IPR004529 all species →	Family	Phenylalanyl-tRNA synthetase, class IIc, alpha subunit	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR040725 all species →	Domain	PheRS, DNA binding domain 3	Interproscan
IPR040586 all species →	Domain	PheRS DNA binding domain 2	Interproscan
IPR040724 all species →	Domain	PheRS, DNA binding domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11538 all species →	PHENYLALANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004826 all species →	Molecular Function	phenylalanine-tRNA ligase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006432 all species →	Biological Process	phenylalanyl-tRNA aminoacylation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009328 all species →	Cellular Component	phenylalanine-tRNA ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene23328.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.