Gene detail

Detailed information of gene23341.t2 in Actinoscyphia liui

Genomic Location: chr6:43854660...43875661
NR annotation: XP_031550504.1, receptor-type tyrosine-protein phosphatase delta-like [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene23341.t2

Transcript

gene23341.t2

ATGTTGTTGTTGTTATTGTTGTTGTTGTTGTTCCTGATATTGTCAACTGAACACCCACGTTTTCTTTCTGCAGACCCAGCCAAGATCCTGAGTTCTCCGTCAAATATCACCAAGATAGAAAGGCAAAATGTGACGCTTACCTGCCAGTACGAGGGCAAACCGAAGTCTAGTGTAGAATGGTTTAAAGATGGTACAAAGATAGTTCATAAGTCGAACTCAAGATTTACAGTCATTGAAAATGGAAATCCAAATAGAGCCATATCTTCTCTCACGATCTCCAACCTTAACAGAACAGACGAGGGAAAGTACAAATGTGTTACGAGCAACAGCATCCAAGCATCCTCTACAGAAGCACAGCTGACAGTCAACTATACCGCAGAAGATGTTAAAATCGAAGCTAGAGAAGGTGTTGACCAAAATGGATCTGTTGATGTTTTTAGCACTTTTATATTGGTTTGTGAAGGAGGTGGAAAGCCACTACCCTCATTTACATGGAAGAAAAACGACAAAGACATCAGTGAACCAGAAATATCTGGAGATCATGACAAAATCTTGACAGTGAAAAATGCTCAGCGAGATGATGGTGGTACATATACTTGCTCTGGTGATAATAAAATTGGTAAACCAAAACGAAGCTCAAATAGTATGGAAATAAAGATAAACGACACCAAACAAATACCAATAGATCAAATTTCAGTATCTACTACCTCTATAACCATTCCTCTTTACATTGTGAGCCACACATCCAGTGGGGACCCAGTCTGTTATTCGATTGTAATAGCGCACAAAGGAAGTGGACCTGCACCGTTAATCGAAAAACTGGAAAAGACACTTGAAAATAACCCAGATAGTACATACATCACAATGATGGTTGGCATTAACGATTCACAGGCTACAGTCGGCGATGGAAAATATTACCCCTTACCAGGCTTCAAAGACCCATGTAAGCAGAAAACAAGACGTCGAAGAGATGCGAAATCAGATGCAGTGACTAGGTCACCAAACGGCATAGCGTACGAGAACAAACTCCTGGAACCTGGTACTCCTTACAGATTTATACAGAAAGCTGAAACTAGCACAAAAGGAAAGTTTGAATACTTTGCATGGACACCACCAGTCATAACAACAAAGGAAAAACCGAAACCGCCAAGTGCAGTATTGGGGATCGTTCTAGGGGTGCTTGCCGCGGTTATCGTGATATGTGTGGTAGTATTGATTGTGGTGATAAGAATACGAAGAAGAAATGGTAGTGATGATGAGATGCAGATGCATGATCGCAGCAAAAGAACAAAGTCAGACCGCTCCAGATTGAACAGCTTTGCTCGTTTTCGAAAAGACCATAGTTACGAACATTATGAACCTGGAGAAGTATATTCTGTGACGGAGTTCGAACAACATGTCCGCCGTCTTCATTCCAATTCCGATTTACTGTTCTCCCAAGAATACTCAACGATCATTTCACCAGCCACTGTAACCTCTGAGGCATCATTAGATCCCAACCAACGAGCCAAAAACCGATATAACAACGTATCAGCGTTCGATGCGAGTCGTGTCATTTTAAGCTCAATAGAAGACGATCCCTTTTCACATTACATTAATGCTAATTACCTGGATGGATTCGAGAGGAAAAGAGAATACATCGCAGCCCAAGGTCCTCTCCCAAACACCTGTGATGATTTCTGGAGGATGGTATGGGAACGAGGATCCCGACTAATTGTTATGGTTACTAACACTGAAGAAAAGGGGCGCGTCAAGTGCCACCAGTACTGGCCTACCACAGAATCCATGGTGTATGGCAGAATCACAGTATCTCTAATGAGCACAGTCGAACTCAGTAATTACACCGTTCGGTCATTCAATGTAAAGATGCAGAACTTGCCTGAAGATCGTGTGATCACGCAGTACCACTACACCGCCTGGCCTGATCACGGAGTACCATCTAGTGTCACGTCAGTTTTGAACTTTGTACGCAAGGCCAGCGCTGCCAACCCACCAGATGCTGGGCCTATGGTTATACATTGCAGTGCAGGTGTTGGTCGTACAGGAACCTTTATTGTGATCGATGCCCAGCTCAAACGAATTGCTGCACAAAGCGATATAGACGTCTACAATTACGTCATGCATCTACGAACCCAGCGAAACCTGATGGTCCAGGTGGAAGAGCAGTACGTTCTCATCCACGATGTTCTTGTTGAGGCAATCGCATGTGGTAACACTGAAATACAGGCACGTTATCTAAGGCACGCGATTCGACAGTTGATGAAACCTAATGAAGAAACAGGTCAAACACCAATAGAGGCGGAGTTCCAACTACTATCCCGTAACAAGGCACCTGCTTCAAAGTTCACCGCAGCCAACCTACACGTGAACAAACACAAGAACCGTTACGCTAACGTGTTACCTTATGACGACACACGTGTACATCTAGCTGCACAGCCAGGAGTTGATGGATCGGACTACATCAACGCTAACTATGTTGACGGTTACATGCAGAAACAAGTATTTGTTGCTACCCAGGCTCCTATCCCAGACACTATTCCAGACTTTTGGAGAATGGTCTGGGAACAAGACTGTCACACCATTGTCATGCTGTCACAGGAGACGGAGAGTGGAAAGGTCAAAGTCCATCGATACTGGCCTGGTAAAGCACCTAAGTCTATTGGAAACCTTGTAATCGAAATGACCCTAGAGAAAGCATTTGAAGATTATGTAATGAGAGACTTCAAAGTCACCAACACTGGGGAAAGTGCATCAAGGGTCGTCAGACAATACCATTTCACCGCATGGCCCGATGTGGGTTCGCCTGACTCCAGTGCGGGTCTTACCGATCTTATTGGGCAAGTACAAAAATGGCAGCAACGTTGTGGAAGTCCTTTGATAACTATACATTGCAGCGCTGGTGTTGGTCGAACTGGTGTGTTCTGTGCTGTCACTTCTTTAATTGAAAGACTCAAAGCAGAAGCTGTTGTCGACGTTTTTATGGCAGTGAAATTATTGAGAGAACAAAGACCTGCTATGGTACAAACTAAGGACCAGTACGAATTCTGTTACCAAACTCTCGGTGAATATCTGGACTCATTTGATCCCTACAACAACTTTGACTGAACCACCTACCCATTACCTTGTAATTTATAAGCACTGGCATCTGTAGATCCATTGCCTCATTCATACATAAAACACTTGGTTTGATAGTCATAGGCAGTTTCGGTCTATTTGGAAAAACGGAGGCTCATGAGAAATTAATTGTTGGAGTTCAACCAAGATGGCTGGCGTGACGTTTATTGCAACCCGGCTATATAAACGGTAACAGTACAGTACTTGAGTACTGCAGTATTATGGTGTCCCACAGGGACCTATCTGTACATGGACCTCTTTAGTCTCTGGTATATAAACGGTAACATTATAGTACTTGAGTACTTCACTATTATGGTGTCCCACAGGGATCTATCTATACATGGACCTCTTCAGTTTCTGGTATATAAACGGTAACATTATAGTACTTGAGTACTGCACTATTATGGTGTCCCACAGGGATCTATCTATACATGGACCTCTTCAGTTTCTGGTATATAAACGGTAACATTATAGTACTTGAGTACTTCACTATTATGGTGTTCCACAGGGATCTATCTATACATGGACCTCTTCAGTTTCTGGTATATAAACGGTAACATTATAGTACTTGAGTACTGCAGTATTATGGTGTCCCACAGAGATCTATCTATACATGGACCTCTTCAGTTTATGGTATATAAACGGTAACATTATAGTACTTGAGTACTGCAGTATTATGGTGTCCCACAGGGATCTATCTATACATGAACTTCTTCAGTTTCTGGTATATAAACGGTAACATTATAGTACTTGAGTACTTCACTATTATGGTGTTCCACAGGGATCTATCTATACATGGACCTCTTCAGTTTCTGGTATATAAACGGTAACATTATAGTACTTGAGTACTTCACTATTATGGTGTTCCACAGGGATCTATCTATACATGGACCTCTTCAGTTTCTGGTATATAAACGGTAACATTATAGTACTTGAGTACTGCAGTATTATGGTGTCCCACAGGGATCTATCTATACATGGACCTCTTCAGTTTCTGGTATATAAACGGTAACATTATAGTACTTGAGTACTTCACTATTATGGTGTTCCACAGGGATCTATCTATACATGGACCTCTTCAGTTTCTGGTATATAAACGGTAACATTATAGTACTTGAGTACTGCAGTATTATGGTGTCCCATAGGGATCTATCTATACATGAACCTCTTTAGTTTATGGTATATAAACGGTAACATTATAGTACTGCAGTATTATGGTGTCCCACAGGGATCTATCTATACATGGACCTCTTTAGTTTCTGTTATATAAACGGTAACATTATAGTACTTGAGTACTTCACTATTATGGTGTCCCACAGGGATCTATCTATACATGGACCTCTTTAGTTTCTGTTATATAAATCCTAACACCACAGTACGATTCTTAATTTAATTACAGTCTTGATTTAGCAAGGGAGAAAGTTCTCAATTGCTCCAAAAACACTAATGCTTCATAAACGTCCTCTAGATTGAGGATAAGAGTTGTTTTCGCTATTGCTGAATACTGTACGTATTTGCTCGTGTCGCCGGGCTGAGCCCTGTATCATAGACAAGATTCTTTAAAATCAGCTTTATGACGATTCTACATATTTGTAGAAGATCTACTAAAGAAAAATATATACCTGATAGTTTGAGCTATTGATTAGTTCGGTCAGATGATAAAATAAACCAAGAAGTATACGTATTTTTTCTCCATATATATTTTTATACTCGTTAGTACCGAAGTGATGACGTCACAAAATACAAATGTTGGAAATTTAATATTTTGATAGCATATTTGGAAAAAAAGTATAAAAATATGATATATCGTAAAATTTCAGAACAATAGAATAAGGAGCAGCTGAGATATGAGCATTTTTGTGTGAAAATATGCCCATACATTCTCTCTTATTTCGGGCTGGATCCAACCCGATGGGATCCAGTGCAAAATAAGAGAAAATGTATGGGCATATTTTGAGATTAAATGTCGCATATCTCTCTATCTATAGCTCGTAGGAACCTGACATTTTCTAGTTATGTAGACAGTAATGCCTTCTTTTTATTTATTTAGGTTTCAAAGCTGTATTGTAAAAATTTTAATTTGGTGATGTCACACTTCGGTACTCTATTATATGCAGCCTTACCTTAAGACACCTTAATTAATTCACATCAGGCCCCGGTTGTACGAAGAGTGGATAGCGCTTTTCGTTGGACAAATGCTTTTGCAGAGGATAAAATTATGCTGTTAACCAATAAATTTATCCACTGGATAGGGATTATAGTGCTATCCACTCTTCGTTCAACCTGTGCCAGAACGATATATAATACAAAATAGAATAAAAACAATGTATATTAAACATATAAAGTATTTGAATTAAAATGTATGTAGATTATAACTAAAAATACCCTGAGCGCCAGAGATTTGTCTCCCCTCCCCTTAAAACTTAAAGCAAGTTTTAAATACAGTTGTAAATCTGAAAACGGTCACAAACAGTTGCCGAAAGTATATACATTCGTATGTTCATGTTTTCAAAACCAAAATATTCCGAGTCAAATGATCAGACGACTGATAGATGAAAGAATAATTACCCGACTGAAATAACCTTTATGTCCTGTTTCTTGCGAATGTCCTTATTGATTAGCTGAAGACTCAGCTGAAAGTTTTCGAGAAATCAAAATTTTCCTGTCATGATTTTCGTAAAAATTCAGTTATTTCTGGAGAATGAGAACAAATTTTATTAAGGAAATCATTATGAATTGTACGTCTATTAAATCGTAATTCTTCAGTACGTACTGTAGATTTAAACAAATCTAAGTGCGGGAGCGCGACAGGACAACACGAACGGAACATTTAGGCTGATTCGTCCTTTCCCAGGTAAAAAAATAAACATTCAGTTCGTACAGAAAAGATGAAATGTAGGATTTGGAGATTCGCAGTTTCTTAGTACAAGTATCAAGCTTTTATGTCACGCTAAAGATAAGTGGGAACCGAAAGCCGTTCATACTATGTTATAGTGATAAGACCAGACTCCACTCGAAATTGGGGGTCACTCTCCGCCCGGGATATAGTCAGACCCGACTTCACATAGGTTTGTGGAGTCTTTTCGTTCCTCGCCGCTGGGGAGGGGAGGTAAGTCAAATCTCTGGCACCCAGGGTAAACTAAAAGTTGTCGCCCCATATTTCGACAATAGTGCAGCGCAGGCAAAGGCTATTATGGGGACCAAATACATTTTAATTTACACAACATGTATAAGACGCATTTAAAAATAAAAACGTTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1NWE3	Receptor-type tyrosine-protein phosphatase S OS=Gallus gallus OX=9031 GN=PTPRS PE=1 SV=3
Q64487	Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus OX=10090 GN=Ptprd PE=1 SV=3
P23468	Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens OX=9606 GN=PTPRD PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000057 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13895 all species →	Ig_2	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR050348 all species →	Family	Protein-Tyrosine Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134 all species →	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06777	PTPRD; receptor-type tyrosine-protein phosphatase delta	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.