Gene detail

Detailed information of gene23379.t1 in Actinoscyphia liui

Genomic Location: chr6:44355318...44372718
NR annotation: XP_020897533.1, patched domain-containing protein 3 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene23379.t1

ATGGAGGCGGAATACACTCAAGAAGTAAAGAAATCGAAATGCGGATGTCTGTCATCTGTGAGCAACTTTATAACGAATTCGTTGGAGGGATTTTTCTACTGGCTTGGTCTAAAAGTCGGAAGGCATCCCTTCAAGACGATCATAATAGTCATAATTGTCTGTGGAGCTTGTATATCTGGTGTGGTGAAGTTTTACCAGGAAAGTGATGGTACAAAACTATGGGTACCTCAGGACTCCCTCGCCAAGAAACATCAAAATTGGGTTTTGGAAACCTTTCCATCGAAGTCGTTGCATACATCTGTTCTTGTGACTGCAAGTGATGTGCTGACTCCAGAAGTATTGAACCAGCTTCTTGCAATTGATATCCAAATAAAGCACCTAAATAAAGGAACAGAAAGTTCATGGGAAAAGATATGTTTCAGGATTGGTCCAGTCTGCTTTTCATCTCATTTGCTTGAACTGTGGTCATACAAAGCAGCTGTCATAAAAAATCTGACAAAATCTGACATCTTACAGAAGATTAATCAACCAGGACTAAGAAGTCCTGTCACCGGCAGAAAAATCCAAGTGGTATCAATGTTGGGAGAAATCAAACGTTCGTCAACAGACAAAAAAATCACTGCAGCCGGTGCTGCGAAAATCTCTTATGGAATAAAGCGAGATAAAGAGGGTGAAGAAAAAGGCTCCAATTGGGAGCTAGACGTTGCTAAACTCCTCAAAGACTGGAAGCTTACTGACTTGTCTGGTGTTTACTGTTACAATAGACAGCGGTACAGAACGGACGGACGAGTGGCCATACAAGATGACATCACGTTCCTAACTGCTGGCTATATACTCATTATTGTCTATGTCTCATTTATGCTGGGAAACCTCACCAGATTAAGGCTAAAGATTTGGTTGGCGATAATGGGCGTGATAAGCATTGGTTTGGCTATCGGTGTGTCGTTCGGTCTCTCTAGCGCCTTTGGTGAAATGTATGGACCGGTTCACTCTACACTTCCATTCTTACTTCTTGGTATCGGTGTTGACGATATGTTTGTCATTGTACAATCATGGAGTAACTTGAATTCTGACGATCACAAAAGTCTTCCTGTGGAAAAGCGCATTGCTCTGGCTTTAAAACATGCCGGCTGTTCCATTACCGTCACCTCTCTTACCGACTTCCTAGCGTTTATGGTTGGAGCAACTACGGTTCTTCCTGCGCTAAGGTCATTCTGTATTTTTGCTGGTATCGGAATTCTGGCCGACTTTTTCATCCAAGCTACATTTTTCACAGCTTGTCTCGCTATTGATGCCAAAAGGCAGGACGGCATGAGGGATAGCTGCTGCTGTTGCTTCAAACTCCCAGCCAGCTATAGAGAATCGTCATGCGGTAGACGAGACAGAATGAAAGAATTTTTTGGCTCTGTTTATGCCAAGGTCGTCTTGTCTTTGCCTGGAAAGATCGTTGTCATGGTGATCACCGCTGTTCTGTTTGGATTCAACCTTTACGGCACTTTAATGCTACGGCAGTATTTTGACCAGATTTGGTTTTTCCCGCCAGACTCTATGTCATACAGATACGTTAAAGCAAATGACAGGTATTTTCCAGCAGATGGTGTATCAGCTGCTATATATACAGGAAAACTGAATTACTTCAAAGATCAAATCAAGCTCCACAACGTACATGAATTGGTAGCAAAAGAACAATACGTGGTTGGGACCACTATAGTTAGTTGGTACGACGAGTACATAGTATGGGCGAAAAGCAAGAAGCCTTCTTCGTATTTAGATGTTTCAGGGTCAAACCCTCGCATCAATAATGAAACCGTATTCTATTCATGGCTGGACGAGTATCTTAAAGGTGCTGGGAAAACGTTTGCTAGTGACGTTCTTTTTACCAATACTACATCAGGAAAAAGAATATTGGCTACCCGCATCAACTTTAAACACAAAGATATGGACACCACTCAGACCGAGGTTAAAGCCATGGATCAACTGAGAGAGAAAATCAAGAAAGTCTACTCAGACCAGATGTTGGTTTTTACTTATGGGCGACGGTACATTAATTGGGAAACTAACAAAATTATCCAAGAAGAACTGTACCGCAATATCGGTCTGGCATTGATTGCAGTATTCGTTATTACACTCATCGTTATTGCAAACTTGTGGACAGCAATAATGGTCCTAACCTGCATTGCCTTAACTCTCGTCAACCTCGGTGGAATGATGTACTTCTGGGGTCTTACGATAGACACAGTTACAACAATTCTATTAGTACTTGCAGTTGGTTTAGCTGTCGATTACGCATGTCATATCGCACACACTTTTATGGTAACACCTGGTACAAAACAAGAGCGTGCGTTCATCACTCTACGAGACATGGGACCAGCGGTGTGGAATGGTGGCTTTAGCACATTTCTGGCATTCGTTCTACTAGTTGCCTCGAATTCATACGTGTTCAAAACGTTCTTTAAAGTTTTCTTTGGAGTGGTACTATTTGGTCTATTCCACGGGCTGGCTTACCTACCAGTTCTACTCAGCGCCATCGGACCAGCTCCTTACGACTCGGCCACAGTCCAGAGCGAACAAGAACCAAACACCCCTAGTCGACATCGCTCCTCACCAGTCCATCCCAAGGATAATTCTGGATTTGTAATGGGCGACAAGCGCAAGAATATGGACCATAATACCGACCAATCAAATGGCACATCGCAAGATTATTACATCCCTCCCGCTGACTACCAAGATGTGTCCGTGGAAGATATAATGAAAAAGATCCACACAGGGAAGTCGTCACAGACATCAAAACGATGA

Transcript

gene23379.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0EEE2	Patched domain-containing protein 3 OS=Mus musculus OX=10090 GN=Ptchd3 PE=1 SV=1
M0R3Q7	Patched domain-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Ptchd3 PE=1 SV=1
Q3KNS1	Patched domain-containing protein 3 OS=Homo sapiens OX=9606 GN=PTCHD3 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001757 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02460 all species →	Patched	Patched family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000731 all species →	Domain	Sterol-sensing domain	Interproscan
IPR003392 all species →	Family	Protein patched/dispatched	Interproscan
IPR051697 all species →	Family	Patched domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10796 all species →	PATCHED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12385	NPC1; Niemann-Pick C1 protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.