Gene detail

Detailed information of gene23574.t2 in Actinoscyphia liui

Genomic Location: chr6:46798658...46808077
NR annotation: XP_028518035.1, ribonucleoprotein PTB-binding 1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene23574.t2

ATGGCTGCTGTACTTGATCCAGACAAACTCAGTAAATTCAGTAAACTGGAAAAAGCGAAAGTTGAGTTTTCCAAAAGACGAAAAGTTTTGTTGAATAATATTCCTGATGGCGTGGACTTAGAGGAGCTGAAACATACAATTCTAGAAGGTCTGAATGCTGTGGAAGTTACTGTAAACAAACAGACAGTGAATATATTATTCAAGAATACACAAGAAGCAGAGCAAAGTGTCAAGACTCTAAAAAGTCTGAACTCTGATTTTGACGACAGAGGGATCACCATCATAGTTCCCGAACCTGACAGCCTTCTCTTTGTGGGCAACCTTCCACTTGAATTCACCGATGAAGAGTTTGACAAACTAATGTCCCAGTATGGGAAACTAGAAAGGGTATTCTTAGTGCGAAGTGAAGTAAATGGAGAAAGTAAAGGATATGGGTTTGCTGAGTATCCTGATAAGAAGACTGCTGGAGATGCCAAGCAGCAGTTATTAAACAGTGGAGCTAAATATGTTTCGGGACGAATATTGAGAGTGGACTTTGCAGAACCAAGTCTGGGTAGTTACAAAGATTTGCACTCCAGAACATTGTTCCTTGATAAACTACCGCGTGATTTTACTGATGGAGAGGCATTGGGACAGTTGTTCAGCAAGTCAGGCACAGTTACTTTTGCACAGGTTGCCGTCCATCCACAGTCAGGGACATCTAGAGGTTTTGCCTTTGTAGACTATGCTACCAGTGAAGAAGCAGAGAAAGGTCAAAAAGCTCATAACGGTGCTACTGTTGGTCACTGTAAAATACGTACATCCTTTGGTACCCCTGGTCGTCTAGGCGCTACTGTCTTAGGTCCTTCATCAAGCAATATAGCACAGGCATCTCAACTAGGATCTCTGATGTCAGTCTCCCCAAACACACTGATTAGAGCCCCACCCTTCAGACTTCAACTCTCTGCACAGCAAATTAATGCACAGGTGATGCCCTTAATGGCTGCCATGCCTATGATTGATCCAAGAGCACAGCTGGGGATGCATAGATTCCCTGACCCAAGATTACCTATCCCATTGATGCGGCCAGAGATGGGTGGCCCAAGAGGCCCTTTTTTTCCAAGGCCAATGTTCCCCAGACCAGGTTTCCTAGGAATGGGTGGACCACGCCCACATCTACCCATTGGCACCCCTCGACCACATGGTCCTCGACCACTAATGATTGGTGGTCCACACCCAATGGCAATAGGTCCAAGGGGAGTTCCTCCTAGAGGTATACCTATACCACATCGCCCTCTTGTTCATAGAAATGGTCCTGTTAGATCACTGGTTGCTGAAAGCCGCAAAGAAGGATTCCAACACTCACAAGAGATCAAAAGTGTAAACAGACCACCCAGTCTACCAGCAAGGCCACAGTTGAATCATACACCCAGTTTCAGCAAAGCAATATCACCAGCAGCTAAACATTCACCACAACCTCTGATGCTTTCTGGAACACAATCTCAACAACAGCACCCACACCTTGTCCAAAACAACATTCATGTAGGTCAAGGACTGCAGGGGGTGCAGTTGCCATTACAACCTAAGCTATCAGAGACCAGACCACTTGGAAATCAATTCTATGGCACACAACAGTCATCTGGTGTTTATCCAGGTAAGCACCAGCTTGGTCTTCCCGGACATAACCAGCAAGTATCTGGTGGTGCTAGACCAGGGTCAATAGATCCTGCACCTCTGATGTCTGTCAGTACTAATAGCACAGGTGAACTGCAAAGACAGGGATACTCTGCCGCTGCTGGCCAGGCAGTTCCTGGTCAAAGTGCAGCGTATCAAGCATACCAGACACCAGGCCAACAGTCATATTTGGCACAACAAAGTGGCCTTCTTCAAGACTATTCACCATACCAACAAGGAATGGGGTATCTTGGTCAGGCCATGTATGCACAAATGTACCAACAGGGAGCTCAAGCTTACCCCCAAAAACAACCTACTGAATACCAAGGCAGCTTGTCCAATACAATAGCACCACTTCTAGGCCAATCACCTGATATCTTCTCTATGAACAAAAGACCAAGATACTGA

Transcript

gene23574.t2

AACAACTGGAATTTCAGAATTTTGTCAAAAAAACAGCAATAACTGCTTTGCTTTCTTATAAACAAACTTCATAGGTATTCTATTATGTATTTAGGAATAATTTAAGACGATATTTCTTGAAGAATTTGAATTTTAAAGCGTTATGGCTGCTGTACTTGATCCAGACAAACTCAGTAAATTCAGTAAACTGGAAAAAGCGAAAGTTGAGTTTTCCAAAAGACGAAAAGTTTTGTTGAATAATATTCCTGATGGCGTGGACTTAGAGGAGCTGAAACATACAATTCTAGAAGGTCTGAATGCTGTGGAAGTTACTGTAAACAAACAGACAGTGAATATATTATTCAAGAATACACAAGAAGCAGAGCAAAGTGTCAAGACTCTAAAAAGTCTGAACTCTGATTTTGACGACAGAGGGATCACCATCATAGTTCCCGAACCTGACAGCCTTCTCTTTGTGGGCAACCTTCCACTTGAATTCACCGATGAAGAGTTTGACAAACTAATGTCCCAGTATGGGAAACTAGAAAGGGTATTCTTAGTGCGAAGTGAAGTAAATGGAGAAAGTAAAGGATATGGGTTTGCTGAGTATCCTGATAAGAAGACTGCTGGAGATGCCAAGCAGCAGTTATTAAACAGTGGAGCTAAATATGTTTCGGGACGAATATTGAGAGTGGACTTTGCAGAACCAAGTCTGGGTAGTTACAAAGATTTGCACTCCAGAACATTGTTCCTTGATAAACTACCGCGTGATTTTACTGATGGAGAGGCATTGGGACAGTTGTTCAGCAAGTCAGGCACAGTTACTTTTGCACAGGTTGCCGTCCATCCACAGTCAGGGACATCTAGAGGTTTTGCCTTTGTAGACTATGCTACCAGTGAAGAAGCAGAGAAAGGTCAAAAAGCTCATAACGGTGCTACTGTTGGTCACTGTAAAATACGTACATCCTTTGGTACCCCTGGTCGTCTAGGCGCTACTGTCTTAGGTCCTTCATCAAGCAATATAGCACAGGCATCTCAACTAGGATCTCTGATGTCAGTCTCCCCAAACACACTGATTAGAGCCCCACCCTTCAGACTTCAACTCTCTGCACAGCAAATTAATGCACAGGTGATGCCCTTAATGGCTGCCATGCCTATGATTGATCCAAGAGCACAGCTGGGGATGCATAGATTCCCTGACCCAAGATTACCTATCCCATTGATGCGGCCAGAGATGGGTGGCCCAAGAGGCCCTTTTTTTCCAAGGCCAATGTTCCCCAGACCAGGTTTCCTAGGAATGGGTGGACCACGCCCACATCTACCCATTGGCACCCCTCGACCACATGGTCCTCGACCACTAATGATTGGTGGTCCACACCCAATGGCAATAGGTCCAAGGGGAGTTCCTCCTAGAGGTATACCTATACCACATCGCCCTCTTGTTCATAGAAATGGTCCTGTTAGATCACTGGTTGCTGAAAGCCGCAAAGAAGGATTCCAACACTCACAAGAGATCAAAAGTGTAAACAGACCACCCAGTCTACCAGCAAGGCCACAGTTGAATCATACACCCAGTTTCAGCAAAGCAATATCACCAGCAGCTAAACATTCACCACAACCTCTGATGCTTTCTGGAACACAATCTCAACAACAGCACCCACACCTTGTCCAAAACAACATTCATGTAGGTCAAGGACTGCAGGGGGTGCAGTTGCCATTACAACCTAAGCTATCAGAGACCAGACCACTTGGAAATCAATTCTATGGCACACAACAGTCATCTGGTGTTTATCCAGGTAAGCACCAGCTTGGTCTTCCCGGACATAACCAGCAAGTATCTGGTGGTGCTAGACCAGGGTCAATAGATCCTGCACCTCTGATGTCTGTCAGTACTAATAGCACAGGTGAACTGCAAAGACAGGGATACTCTGCCGCTGCTGGCCAGGCAGTTCCTGGTCAAAGTGCAGCGTATCAAGCATACCAGACACCAGGCCAACAGTCATATTTGGCACAACAAAGTGGCCTTCTTCAAGACTATTCACCATACCAACAAGGAATGGGGTATCTTGGTCAGGCCATGTATGCACAAATGTACCAACAGGGAGCTCAAGCTTACCCCCAAAAACAACCTACTGAATACCAAGGCAGCTTGTCCAATACAATAGCACCACTTCTAGGCCAATCACCTGATATCTTCTCTATGAACAAAAGACCAAGATACTGACTGGACCACAACTATGCTTTGTACAAGTATCCCTTGACTTGCAAGTCCCACAACATTCCAGCAACATTTATTTTTACCAAGACAAAAATCTCCCATGAAAAGACTAGATTCCTAGTGTTAAACACAGTAGAACTAATGCTAGAGCAGGTTTAATTGGACTGTGGAAACCCTAGCGTGTATCTTAGGGGGTTCACAGGGTGTCCGTGTGCCCCCCTTCCTACCTAAAAACATTCTAATTTCTATCTAATACAAAATAAGTTAAGGAGCTCTGTCATGACATCATATCTTGAAAAGTTTACCCTAAATTTTTCAAGATTTTATATTAACGAATTTTAAATTATGCAATTTTTTGTCAGCACATGCACAGCTCGTGACAGAACCCCTGTACAAAATTTTGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6CSV3	Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=PAB1 PE=3 SV=1
P15771	Nucleolin OS=Gallus gallus OX=9031 GN=NCL PE=1 SV=1
Q9ASP6	Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana OX=3702 GN=LIF2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005607 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050502 all species →	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025 all species →	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24999	RAVER1; ribonucleoprotein PTB-binding 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.