Gene detail

Detailed information of gene23653.t2 in Actinoscyphia liui

Genomic Location: chr6:48024945...48026684
NR annotation: XP_020911836.1, LOW QUALITY PROTEIN: rho GTPase-activating protein 5-like isoform X2 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NU25	Rho GTPase-activating protein 35 OS=Xenopus laevis OX=8355 GN=arhgap35 PE=1 SV=1
Q13017	Rho GTPase-activating protein 5 OS=Homo sapiens OX=9606 GN=ARHGAP5 PE=1 SV=2
P97393	Rho GTPase-activating protein 5 OS=Mus musculus OX=10090 GN=Arhgap5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002900 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01846 all species →	FF	FF domain	Family	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF16512 all species →	RhoGAP-FF1	p190-A and -B Rho GAPs FF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036517 all species →	Homologous_superfamily	FF domain superfamily	Interproscan
IPR002713 all species →	Domain	FF domain	Interproscan
IPR051978 all species →	Family	Rho GTPase-activating domain-containing protein	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR032835 all species →	Domain	Rho GTPase-activating protein, FF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46005 all species →	RHO GTPASE-ACTIVATING PROTEIN 190	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0008361 all species →	Biological Process	regulation of cell size	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20908	GBP6; guanylate-binding protein 6	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.