Gene detail

Detailed information of gene23698.t1 in Actinoscyphia liui

Genomic Location: chr7:721163...733353
NR annotation: XP_020900724.1, ras-related protein Rab-38 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene23698.t1

GTCGAAATGAATTCTGAGGGAGAAAAGCGGGAATACTTATTCAAAGTTCTGGTGATAGGAGATTTAGGAGTTGGAAAAACAAGCCTTATCAAGCGATATGTACATCAATTTTTCTCTGTGCACTACAGAGCTACTATTGGAGTGGATTTTGCTCTAAAAGTCATTAACTGGGACCAAGATACACTGATTCGCTTACAACTATGGGACATAGCTGGTCAAGAGCGATTTGGCAGTATGACAAGGGTTTATTACAAGGAAGCTGTTGGTGCATTTATTGTTTTTGATGTAACAAGAGCCTCTACATTTGAAGCTGTACAAAAATGGAAAAACGACCTGGATTCCAAGGTTATGCTTCCTACTGGTGAACCCGTACCTACAGTATTACTGGCAAATAAGTGTGATCAAACCAAGGAGGGGTTAGTAAACAATGCCAAGCAAATGGACGAGTATTGTCAAGACAAAGGGTTTATAGGATGGTTTGAGACGTCAGCAAAAGAAGATATTAATGTTAGTGATGCTGCCAATTTCCTAGTTGCCAAGATTTTAGAAAATGAAAAGGCCAACAACTTTGAAGGAATCCCCAAAGACCCAGAATCAATCACTCTTTCTGCTGATGCAACATCAAGCACCAATTCACCAAAGTCAGTGAATTCAAACCAAGGATCTTCAGAGCCACAGAAGAGTAGCTGCTGTTGAATTTATAATTATTGCAGTTTAGGATTTTGTAATTACATTCTCAATAATATTCTTGGTATAATTTGCACAGTGTATTATATACAATATACCTAGTAGCTAGCTAGTAGTGATTTGACAAATTCATTGGAACCTGGTTATAGTACAGGGAAAAATTTATAAAACACATGAATGGTTTTTGTCATATTCCCATTTTGAATCAATGGGAATAGTTCGGTAAAACCATTCATGTGTTTTATAAATTAATAGTTTTTGTCATATTCCACATTTTGAATCAATGGGAATAGTTCGGTAAAACCATACATGTGTTTTTTTAATTATAAATTTTTCCTTGTGTAGGCCTATTTTTAGTTTTATCGAAAATATGGTGGTTGCATAAATAGTATTGGTTGGCATTCAAGGAGATTGCATATTGCATCTGGACTAAATTGTGGAGTTCAGTCTGGATGTGAAGCAGGCTACATGTAGACATAGATAATAGACCATTCCCTAATTCGCCTCAATGCCCACAAACAATGGATTCAAGTCAAGGTTGGAGTTGACAAAATACAGAGAATGTATGAACACTGGAACTCCACCCTTGACTTGGATCCATAAATGTTTGTGACCAGTGAAGCATAACTCGAGAAAGATCTATTAAATGTATCTGGACATTTGCAAACTTCGGGGGCATAGCTACTCGGATGCCTGGATGCATGCATGTACGTCACTCAAAAATGTTGGGGGGAAAAAAGGTAGCTTATTTTAGAAAAATGGGCCTTTGACTTCAACATCACTCGGAAAAAATCCTGGCTATGCCCCAGGACATTGAGAGAGCCATAACACCCCCAAGAATCTTTTTTGAGTTTCAATTTTCAGTCTAACACTAAGACGATTTTAGGGAGATTTCTAGATTCTAAGAACTAGATGCACTCTGAAAACACATGTAGCCATTTAAAGGGCCATAATCAATGTCATCATAATCAATGTCATTATATTCTTTGAAATTTATTTTACAAAATCTATTTAAAAAATCTATTATTTTGAATTGTAAGTATAGTTTTGTAGTCTCATTTATCAGTTATTTTCAAAATAGAATAATATTAAAATTAGTATGCAATACATATATTTGTGGATCAGAGCAGATTCATCCTTGGGAACCCAGGGATATTATTCTGTCCATCATTTCACGTTCACAGAAAAAATACCCCTGGGAACGTTGTCTATTAGAACTTGTTCCGGAAGTGAAAATCTATCTCGTTTCTGATAGGTCGACCAATCAGCATCAAGTATATTTTGATAAACAATGAACGCCGCCATTTCGAAATTTTTCACTTCGGAACAAGCTAGTTCTAACAGATAACGTTCCCAGGGGTATTTTCTCTGCGAGCGTGAAACGATCGACAGAATAATATCCCTGGGTTCCCAAGGATGGAGCAGATTATATGTTCAACACCTTAAAATCCTTTCCCATGCCATGTTATATCTCAACGTTTTGATTGGATGAAACAAAATATATCGACCAATCAAAATGTTAAGAAACATACAACGCAGTATCATGTACTGCACAAGCTTTTTCAGTCATGAAATTATTTTTGATCTTTGCATAGAAACACAGAAAATCAACCCCCCCAGAAATACTCTTGTTGTGTAAAAGTAGCTAGGACTACTGGTAGTATGTTTCTGGTTGTGCTGTTATAAAAGTTATGTGAGATTGATTTACCTAGAATTATTTTAATGTAATGAATTAGCAATGCATGGGTATACCGTACACAGATTAGAGAGACTTAGGAAACACGACGTGAAAGATGACGGCATGCGCACTGATGAATATTATGAAAACATGAAGAGGATGCGAAAACAAGTGAAATGGCGTTGTGAACTTGACATCGCGATGTCACGCTGGTCACACAATGACTGAATGTAATATATTCGTCATCTGACGTCGCATTTGCTAAATCTCTCCAATGACTTATAGACCTTGATCAATTATAATGTAGAATTTTTATCAATAAAATTTATCTTTACAACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13637	Ras-related protein Rab-32 OS=Homo sapiens OX=9606 GN=RAB32 PE=1 SV=3
Q9CZE3	Ras-related protein Rab-32 OS=Mus musculus OX=10090 GN=Rab32 PE=1 SV=3
P57729	Ras-related protein Rab-38 OS=Homo sapiens OX=9606 GN=RAB38 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001285 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR030697 all species →	Family	Ras-related protein Rab29/Rab38/Rab32	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47981 all species →	RAB FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0008333 all species →	Biological Process	endosome to lysosome transport	Interproscan
GO:0045335 all species →	Cellular Component	phagocytic vesicle	Interproscan
GO:0090385 all species →	Biological Process	phagosome-lysosome fusion	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0031982 all species →	Cellular Component	vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07918	RAB32; Ras-related protein Rab-32	-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.