Gene detail

Detailed information of gene23741.t2 in Actinoscyphia liui

Genomic Location: chr7:1495983...1550597
NR annotation: XP_020898838.1, regulating synaptic membrane exocytosis protein 2 isoform X6 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene23741.t2

ATGGCTGGGATGCGAGGTCCTTCGTCCCCGCCGCCACCTGACCTCTCTCACCTGACAGAAGAAGAGAGAGGTATTATCCTAGAAGTCATGAATCGACAAAAAAACCTCGAGTATCAAACACATGAAATGCAGAAGCAAATGATGAAAGAAGTCGCGACTTTCGAGAATCAAATGGAGAAAAAAACTGATGTCCAAACTAAAGTGCCTGACTCTAACGTCTGTGAGATCTGCCAAAAGACAAAATTCACCGAGGGAACGGGCAAGGAGTGTAAATACTGCAAATTAAAATGCTGCTCGCGTTGCGGCGTCGAAGTCTCAATCCAGGGAGCAAAACAGTCAGGAGCAGCGCCTGGTCTCTCTCTCATCTCCAACCTAATTCAAGACTTCAAAACTCTCGCTCTTGGACCTGAGGTCCATTGGTTGTGTGTTATATGTAAAAAGAAACAAGAAGTTTTAACAAAGACAGGAACATGGTTTGGACCAAAAGACCCTGCCATGAAAGCCATAGATGACTCAAACTCACAATTTGGAAGTGACTTTAGAGCAATTCCTTCTGAAGAGGATAAAAGAGCAATGCGGAGGCAGGGCTCAGCTAGGGGGAGCCTTCGGCGGGGTGCTAATATGGAACATGAAAGTGACAGGGCTAGACGAATTGAAAATGAAAGACAAAACTTCTTACGGAGACCATCACTGTCTGATGAAGAAGTTGAATCAATACAAAGTGGCCCCTATGGTATGTACTATAGTGATGACGAAGCAGCAAGGTATGGTGAAAGGGGCAGGAGAAAAGTGACATTTCATGATGAACGAGGTCGTGGAAGAGGTGGGCCTATGCAAGGCAATCAATTAGGGCGTGGCAATAAGGGTCCATTCTCAGGTAAACCTGGAGTGGGACCTCAGGGACAAATGGGAGGTAGAGGTGTTCAGGGACCAGGAGGCCAACCTGGTGTACGACCAGGGTTTGGGCCCCAGCATGGTCCAGGAGCAAGACCTGGCTTTTCCTCACAGCAAGGACAGCCTCCTGGGGGTAGGGGTCATGGTCCTCAACAGCAAGGTCCAAGACCAATGGCTCCAGGAAATCAGCCAGGTATGCGACCACAGATGCAACAGCAGCAGCTACAAGGTCATGGTAGAGGTGGACCACAAGCTTCTCAACAAGGAATTCGACAAGGTTTCCCACCAAGTCAGGGAGGAGCACCTCCAGGGAGAGGAAGTCCTAGCCCTGGTAGAGGGATGGGACAGAAACAACAAGGTGGTAGAGGAGTTCCACCTGGGTCAACGCATGGACCCCAACCTGGAGGAAGAGGTGGCATGCCTCAAGGTGGATCACAGATGGCTGGTGGTAGACCTGGAGGCCAACAGGGACCAAGACAAGGACATCCTCAACAACAGATAGGAGGGCCCCATCAGCAAGTCAGGCCTCAGCAACAACAGCCACCAGGAAAACAAATGGGAGGGTCCCAGCAAATGGGAGGACCGCAACAAATGGGAGGACCACAACGAATGGGAGGACCTCAACAAATGGGAGGACCTCAACAAATGGGAGGACCTCAACAAATGGGAGGACCACAAAAAATGGGAGGACCTCAACAAATTGGAGGACCGCAACAAATGGGAGGACCACAACAAATGGGAGGACCACAACAAATGGGAGGACCACAACAAATGGGAGGACCGCAACAAATGGGAGGACCCAAACAAAAGGGAGGACCCAAACAGATGGGAGGACCCCAGCACATGAGAGGGTCACAACAGCTAGGTGCACCTCAGCAAATGGGTGCCCCTCAGCAAATGGGTGCCCCTCACCAAATGGGTGGCCCCCAGCAAATGGGTGCCCCTCAGCAAATGGGTGCCACTCACCAAATGGGTGCCCCTCAGCAAATGGGTGCCACTCACCAAATGGGTGGCCCCCAGCAAATGGGTGGCCCTCAGCAAATGACTAGCCCTCAACCTGGTGGCGGACAACAACAAATGGGCACACCTAAATCAGCTCGTCGACAGATTCCACCTCAAGGATATCAAGGACAAGGACCTAATGCACGTCAGCCAGCTGAACGGAGATCAGGACTGGTGGGATCTCCACCAAAGATAAATAGCCTCCAAGGTCATGTTGGTAACGACCGTAGCCAACAAGGAACTTATCCTGGACAAGATGGCCAAAGATCAGATAGGAATTTGCCTACTCAGAATGGAAGGCTAGACTCATCACCACAAAGTGTAGATAGTAGAGGTACAACCCCTATAAAGGTTCCTGATGTTAGACCTGGACAGAGACCTGATAGCCAACAAAGCTATAGGCAAGGCATGACACCTCAACAGGGATTTGGACCTAGAGGGCAAAGCCAGCCAACATATGGTTCCAGTCCAGGATCTGTTGTTGGTCTTAATGGAAAAGCTATAGACAATCAACCACATTATGGTAGCCCAACGCAAATATATGGGCGTGACTCACCACAAAGTAGACTGAGCAATCTATCTGGCCGAGGAGGGGTTGAAGACCCTTCTAGTTTTGGTGGACGTCAGTCTGGGTTTAGTGATGGGATTGGAGGAGATGGTGTGATGGATGATCCAAAGAGCACAAGATCTTCTACAGCAGATACTTCGAGTGAAAGCGCTGTAAAGTGGTCGCCGCCTGATGATGACAATAAATGTATTGGTGAAGTGTTACTTACAAGAGATCCTAGGTTTACACCATCATCTATGACAGAGCCAAGTTCGTTATTTGGTCTCCGTATAGTTGGTGGTAAAATGTCGGATGACGGCAAAATGGCGGCGTATGTTGTGGAAGTTAAGAAAGGAAGCCCTGCTTTTGTACAGGCAAAGCTGCAGGAAGGTGACGAGGTTATGGAATGGAACGATCAATCGCTTGTTGATTGCACGTTTGAAGAAGTCCAAGAGATCATTAATTCGACGGACGATTCGCCTGAACTCCACCTCGTACTCTGTAGAGATAAAACTAAATTCCCAGCAAAAGATAACCAGTCGTCACGACGAGCACCTACCACTGGTTCAGGTTCTCCTGTCAAAAGAGATCGTACATCTCCTCATACAATGTCAGGGCCACAGGATTCCCGGTCAAATTTCGGATCTGATAGAACTAATGGACCTGTAGGATCCAGAACGAACGATCAACCTGGTTTTGGTTCCCAAGTCTCTGATGACGACTACTTCTTTGGTGGTGGTCCCTCATCGGACCATAGTAGAATGGCAGACACCGCTGGCCAGAAAAGTCGCTTACTCAGCGGTAGAATACAGATCCGGCTGAGTTATGATGAAGACTCTCATAATCTTAACGTTACCGTGGTTACTGCTGAAGGACTTACTTCAAGGGAAACATCTACCCCACCCAACCCTTACGTCAGAATATATTTTCTACCTGATAGAAGCATGCAAAGCAAACGTCGCACGAAAACAGCCATGAAAACAGCTAACCCTAAATGGACCCAAACATTTGTCTATCCATGTAGAATCCAAAAGTTTGTTGGTCGGTCATTAGAAATCACAATCTGGGACTATAGTAAAGTAGGGTCAAGTGAATTCATAGGCGAGGCATTAATTAACATGGTTGAAGCAAACCTCGATGGTAATACATACTGGTATCCATTAAAAACTCACGATGAGAATGGAGAGCCCCTGGCCCCACCCACGCCTAACCAGTCTCCCCAGAGCTCATTTAGAATGAAGGGCCAAAGAGGACAAGTGGCTGGTGAACTCGGTTATGGAAGTGATTACGAGGATGAGTCGTCCCGTTATCCCGCACCAAACGGAATGATTCCCGGTGCGCCAGGCTATGTACCCGATGGTGATCGACTACATCGGGACAGTCCACCCAACTCGTACAACCAACAAATCGTACCAGCTTACTCTGGTTACCATACAACGACCACAACGCATGGCACATCTTATCCTTATACAGCCGCTGACCACAACAGAACACAACCGTTACAGCTTAGATCCATTCAACATCCGGGACTTGGGCGCCAACTTGAAGGGCGCATGTCACCAGGCATGTCACCTGCAATGCATCATGGTTATCACACATTACCGGGGCAGTACCCATTGGGTCGAACCTCCCCGATACACGGCCCGGGGCAGAAAAAGTCTCGGGTACTGCCGCAATTACCACCTGGCCGGGAACCAATGGACGAAGAAGAACGAGCCCGCGCTGCGAAACAGAAGCTTAAAGAAATGGATATAGACAAAGCAAAGCTAGTGATAGGCGGCTCGCGAGGCAGGGTGGGATATGGTCAGGCGCCTGATCACGTGTACGATATGACGTATGACTCCGCGTTAACCCCGAGACCTGGGCACCACTCTCCTCGTATGTCACCGGTTTCGCATCCTCGGCAGGCGATTGGTCCACACCCACACATGGTCAGCCCGAACCAAGCATCCCGTGGTGCACTTCGGCAGCGGCGTAACAGCACTAGTATGATATCTTCAATCGAACAGGAGGGTTTCCTGCGTAGTCCCATGCAGTCCCATGCTAGCCCAGTCCCTCTCGGACACACTGGCAAGAGTGCGAGCATCACGTGTCTACCATCGACAGAAGCAGGAGAAAGAATACCCAACGGCGGTTTCATCAAGACTTCGCGGCAGGCTATGCGAAACGATAATTATGGTGGCAGCGGTCGAAGTAGTAGGTCATCGTCTATCGCTGATAGTGATCGCAGTGGCAGTATCAATAGTATCCCAGGATCCATAGCAAGTAGTGAAAGTGGCAGTCCATGGCTGCCTCCAAGTTTAAAACTTGGAACCGAAGGACATTTAGGTGACTTTATTGACGGATTAGGACCTTCGCAGATGGTTGGACGTCAAGTTTTAGCATCTCCATCGATGGGCGATATTCAGCTTGGTCTTTGTTATCGTAAAGGAGCCTTAGAAGTTGAAGTGATAAGATCCAAAGGACTTCTACCAAAACCCAATACCAAATTGCTTCCAGCGCCGTACATTAAAGTTTACGTGATGGAAGGAAAACGATGCATCGCCAAGAAAAAGACAAGAACAGCACGACGAACACTGGAACCATTGTACCAACAAGTATTAGATTTTAAAGTCGATATTCGAGGGAAAACATTACAGGTCATTGTATGGGGTGATTATGGACGAATGGATCGTAAAGTCTTCATGGGCGTGGTTCAAATCCTTCTGGATGATCTTGACCTTAGTAATTTATGTATGGGGTGGTACAAGCTGTTCTCTACGTCATCAATGTGCGACCCACCCCTCCCCACGTCGTCACCATTAGGAGGTTCACCAAAGAAATCCCCAGCCCCGTCCCCACGGTCGTCAATCCAACACAGTGCTAGTCCTCGAATGTCTCCATTACCGAGTATTATGGCGCCGGATCATCGTCAACGAGGTCATAACTACGATGACGCTGAAGGGGACTTTGTATAA

Transcript

gene23741.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EQZ7	Regulating synaptic membrane exocytosis protein 2 OS=Mus musculus OX=10090 GN=Rims2 PE=1 SV=1
Q9UQ26	Regulating synaptic membrane exocytosis protein 2 OS=Homo sapiens OX=9606 GN=RIMS2 PE=1 SV=2
Q9JIS1	Regulating synaptic membrane exocytosis protein 2 OS=Rattus norvegicus OX=10116 GN=Rims2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001484 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF02318 all species →	FYVE_2	FYVE-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR039032 all species →	Family	Rim-like	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR010911 all species →	Domain	Rab-binding domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR041282 all species →	Domain	FYVE-type zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12157 all species →	REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0042734 all species →	Cellular Component	presynaptic membrane	Interproscan
GO:0044325 all species →	Molecular Function	transmembrane transporter binding	Interproscan
GO:0048167 all species →	Biological Process	regulation of synaptic plasticity	Interproscan
GO:0048788 all species →	Cellular Component	cytoskeleton of presynaptic active zone	Interproscan
GO:0048791 all species →	Biological Process	calcium ion-regulated exocytosis of neurotransmitter	Interproscan
GO:0050806 all species →	Biological Process	positive regulation of synaptic transmission	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15297	RIMS2, RIM2; regulating synaptic membrane exocytosis protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.