Gene detail

Detailed information of gene23884.t1 in Actinoscyphia liui

Genomic Location: chr7:4428976...4457160
NR annotation: XP_020895418.1, splicing factor 1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene23884.t1

TAAAAGGTGGACTTGGTGGATAGCCACCGTACGTACGTTTAAAGGTAGATGCCACCGTACGTACGTTAAACAAACAAAGAATGGCTTGGGCTGCCTGTAGAAAATTTGTTCGAGCTCAGCAACTCGTTCCCGGGGCGAAAAGAGAGGGCCCTGGGAACGAGGTTGCGAGCCCAAGATTGCGGTCACAGTACAAGCGCATGCGCACTACTCATAATTCCCTTTCATCGTGAGTCTCGACGTTTTGGTGAACTTAGAAATGTTTCTTTGACAAAAATATCAAAACATTTCTTGGTTTAACAAAGAACGACACGTTTTAAAATTCTTTATTAGTAAGTAATACATCGTTACGACTAGAATTTTGTAACAAAATGTCTCATATGACCGGAGCTAACACGACTCCATTGGGGAGACTTCACCCGGTTTTGGCGGGCAAGCAGTCGACTGACATGGAGGGTCCTCTCCCGTCCGGTCCTCCTGCAGTAAAACGTCCTTTGGACCAGCAATCAGCTAGTGACAGAAAAAAGAAAAAGCGAAGCAGATGGGGAAAGGAAGATAAGAAAATGATAATCCCTGGTATGCCAACAATATTACCGCCAAACTTAAATGCAGACCAACAGAAAGCATATATTTATCAACTTCGAATAGAGGAAATCAGTCGCATGTTACGGACTGGAGAACTTGGCATCCCTGAAAATCCTGAAGACAGATCTCCATCACCGGAACCCATTTACAATTCAGACGGCAAACGACTAAATACAAGAGATTTCCGTGTGCGTAAAAGATTAGAAGAAGAAAGACATCACAAAATTCAAGACGCTTTAAGGCTTAATCCAGAGTTTAAACCTCCAGCAGATTACAAACCACCACTGATAAAGATCCAAGATAAAGTAATGATTCCACAAGATGAAAACCCAGAGGTGAACTTCATTGGCCTATTAATTGGACCAAGAGGCAACACATTAAAAAACATGGAAAAAGAGAGTTGTGCAAAGATTATGATAAGAGGGAAAGGATCAATTAAAGATGGAAAGGTGTGGCAGAAAGGTCCAGGCAATAACCAGCAAAACTCTGGCGAAGATGAGGAATTGCACGCCTTAGTTACAGGACCTACACATGAATCTGTTGTTAAAGCTGTTGCCATGATTCACGATATATTAAAGCAAGGTATCGAAGCACCAGAGGGCCAGAATGACCTTAAAAGAATGCAGTTAAGAGAGTTAGCAGCACTGAATGGAACACTACGTGAAGATGAATTACTAAGCCGGTGCAGAAACTGTGGTGCAGCCAACCATCGTCACTGGGAGTGTCCTGAACAGAAAAATGTGACTAACAGTGTCATCTGTACAAAGTGTGGTGGTGCTGGTCATTTAGCTAACGATTGTGTGCAAGAAGAAGGAATCACACCAATACCAATTATACAGGTAGACAAAGCAAAGATGGACAGTGAGTATTTATCACTAATGGCAGAATTAGGAGAAGGTCCTCCACCGCCAATGCCAGGTCCTGCTGCTGTCCCACCACCACCACCACCACCACCTGATGTCCAACCCTTACCACCTCCACCTAAACCAGCTCCACCTCCTGCTCCACAGCCGTTAACTAATCCTATTGCTGCACCTTGGAATCCACCTGGTCCTAAACCATTGATGAGTACTCCAGTTCCAAGACCTCCTAATGTTCGACCTCCAGGACCTGTTAATGGATCAGGAGGTCCTCCACCTTCTTGGAGTAAACAACAAGGATTACTGCCTCCCCCTGGACCACCACCAGGATTGAATGCGATTGCTGCAAGAGGCTCTTTACCACCACCACCAACAGCTCCATTCCAGCCTAGTGGTGTACCAGTACAACCACTACCACCAACAGCTCCATTCCAGCCTAGTGGTGTACCAGTACAACCACTACCACCAACAGCTCCATTCCAGCCTAGTGGTGTACCAGTACAACCACCACCACCTCCAGCTACAGGGGCAGTAGTTCCGCCATGGCAACAATCAACTGGTAATGTACCACCGTGGCAGGTCAATCAGCCGCAAGGTTTTGTACCACCACCACCAACGTTTGCACAGTTCCAAGCACCACCTCCACCACCACCTCCACCACCTTCAGATCATCCATGGGGATCACAGTCAATCATGGGTGCACCCCCACCTCCTCCACTGCCTCCACCATCTTCATAGACAAGATCCTATTAACAGTAAATTATTGTCTACAACAAACAAGTGAGCCAGGTCATCAAGTGTCTCAATTCAACAGTTGTTAGCTTTTTTGATGATAATCTCGAATAGTATACTGTAAATGCCATATTTTTATAATTCTGTGCAGTATGATAATAAACTACAAATCAGTGTGGTTGCAGGATGTCACCAACTCTTTGTAAATAGACGGTGAGCTAATTATAGAGTCCACTGTCATTATATATCAGTCTTACAAAATCTCTCTATGTAAAATTAAGGTGTTAAAATTATATGACTGTTGTTTTTAACATTTTCAAAATTACATGACCAAACCAACTCCAGCATTCAGCATTTTTATCTGCCTTCACTCAAACCATTGATTGGATGATAGCATTGGGGTGGAAAACATTGCAATGGGGTGGAAGACAAAACATCTCATGTCTGGGATTGTCTGGATTGTGTAATTTTGTTAATGGTTGTCCACCAAGTAACAATGCTTCATTTAAGTTAGATTACTGTACAAGGCTTCTTTACATACTAGATTACTGCACAAGGCTTCTTTACATACTAGATTACTGTACAAGGCTTCTTTACATACTAGGTAGATGTGTTCTTGTACAAAGGTAGATGTGTTCTTGTGCAAGGGTAGCATTTACTAACTAAAGGCTTCTTTACATACTAGGTAGATGTGTTCTTGTACTAGGGTAGCATTTACTAAGGCTTCTTTACATACTAGGTAGATGTGTTCTGTGCAAGGTTAGCATTTCTTCTTTACATACTGGGTAGATGTGTTCTTGTACTAGGGTAGCATTTACTAAAGCTTGTTTACATACTAGGTAGATGTGTTCTTGTGCAAGGGTAGCATTTACTAAGGCTTGTTTACATACTAGGTAGATGTGTTCTTGTGCAAGGATAGCATTTACATAAGGCTTGTTTACATACTAGGTAGATGTGTTCTTGTACTAGGGTAGCATTTACTAAGGCTTCTTTACATACTAGGTAGATGTGTTCTTGTGCAAGGGTAGCATTTACTAAGGCTTGTTTACATACTAGGTAGATGTGTTCTTGTACTAGGGTAGCATTTACTAAGGCTTCTTTACATACTAGGTAGATGTGTTCTTGTGCAAGGGTAGCATTTACTAAGGCTTGTTTACATACTGGGTAGATGTGTTCTGTGCAAGGGTAGCATTTCTTCTTTACATACTGGGTAGATGTGTTCTTGTACTAGGGTAGCATTTACTAAAGCTTGTTTACATACTAGGTAGATGTGTTCTTGTGCAAGGGTAGCATTTACTAAGGCTTATTTTGCATACTAGGTAGATGTGTTCTTGTGCAAGGGTAGCATTTACTAAGGCTTGTTTACATACTGGGTAGATGTGTTCTGTGCAAGGGTAGCATTTACTAAGGCTTATTTACATACTGGGTAGATGTGTTCTTGTGCAAGGGTAGCATTTACTAAGGCTTGTTTACATACTGGGTAGATGTGTTCTGTGCAAGGGTAGCATTTACTAAAGCTTCTTTACATACTAGGTAGATTAGGTAGATGTGTTCTTGTGCAAGGGTAGCATTTACTATGTTTTGTAATCTGATGGAAGTCATATTTATAAATTGCTGTGTTGATTCCAACAATAATTACTGTACTCAAGTCAGAGAAATAAAGTTTTACTGATATACTCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15637	Splicing factor 1 OS=Homo sapiens OX=9606 GN=SF1 PE=1 SV=4
Q64213	Splicing factor 1 OS=Mus musculus OX=10090 GN=Sf1 PE=1 SV=6
Q8NIW7	Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=bbp-1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005959 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16275 all species →	SF1-HH	Splicing factor 1 helix-hairpin domain	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00013 all species →	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR032570 all species →	Domain	Splicing factor 1, helix-hairpin domain	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR045071 all species →	Family	KH domain-containing BBP-like	Interproscan
IPR047086 all species →	Homologous_superfamily	Splicing factor 1, helix-hairpin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11208 all species →	RNA-BINDING PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13095	SF1; splicing factor 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.