Gene detail

Detailed information of gene23893.t2 in Actinoscyphia liui

Genomic Location: chr7:4572199...4580757
NR annotation: XP_029195403.2, uncharacterized protein K02A2.6-like [Acropora millepora]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene23893.t2

ATGGCGGTAAACAAGTTTTGTGAAGTTTGCAGTAAAGCCGGCTTAATAAGCAACATGGTGGCGAAGCAAGTGAACATGGAAGAAGCATTGCTTATATGTGAAAATATAGAGTGTGTGTTCCCATTAGGAACACCTCGTTTTTCTACCTTCATCATATCAAGATCACTGGATGAGAAGTCAAACTATAAACCAACTAGAAAGAACGTTGGACTTATAGTAGCAGAGAACAACAAAGCAGTACATGAAGATAAAAAGTGTACAAAGATTCTTCACTGGCAGAATGTTGATGCTCTGTGTTGGCTGGACAGTGCTTTAAGTTTACTTGTACATAACAGAACTATTAAGCAGTTGTTATCAAGAGTACAGACTTGTGAAAACTCCTTGTTAAACAATGTAGTTGATCAATACTCAAAAGCACAATACCTCTCAGAATTTGACTTGCCAAATGCAACCAAGGTATTGGAAGATGTCCGTAGTCTTGTGTGGACATATTTATGCCCTAAGATGAAATGCACTGTAGGAGTAAATGACTCTCCACTGTTCGCATTGTCGTTACTGTTTAGAGAGAATGCTGTTACTGCAGACAATTGTGTTCTACAATATACTTGTAAATTTACGTGCCAACAATGTGGACATAACGAAACAACCAGGTTACTACATTGGCGACGAGGTGAGACTATCTTATTAATGGAACACTTAGGAGAGACACCTGTACGTAGCAGTCAGATTAGAGATTGGACCGCAAGGGACCCAATCATCTCACAAGCAGTACAGTTCACTTTGGCAGGTTGGCCTACAGAGTGTACTTCTGATGAGTTCAAACCATATTTCCAACGGAAGACAGAGTTGAGTGTGGAAGAAGGGTGTTTGTTATGGGGGTCCAGAGTAGTTGTCCCACCCCAGGGAAGGTCAAAGGTACTAACTGAACTACATGAGGCCCACCCGGGAGTGTCACGCATGAAGGCTCTTGCACGCAGCTACGTTTGGTGGCCAGGGATGGATCAGGGAATCGAACAGGAGGTTAAGACCTGTGAGGCATGTCAGCAGCATCAGGTAGCCCCAGCGGAGGCCCCCCTGCACCCCTGGGAGTGGCCCGGACAACCTTGGTCCAGACTCCACATAGATTATGCGGGACCCTACATGGGAGAAATGTTTCTTATTGTAGTGGACTCCTACTCTAAGTGGTTGGAGGTGCACGTAATGAAATCTACCACATCAACTGCAACCATCGAGAAGCTGAGAGAGATATTTGCTACGCACGGCTTGCCAGAGACGGTAGTGAGTGACAACGGTACAAATTTCACAAGTGCTGAATTTTCTGAATTCATGAAAAGAAATGGCATCAAGCACATTAAAGTTGCCCCCTACCACCCTGCTTCTAATGGCCAAGCAGAACGTGCTGTGCGCATATTTAAAGAAGGATTTGTGAAGATGAAATCTGGAAGTGTGCAAACGAAGTTGTCCCGATTCCTTCTGAGTTACCGCACAACACCACACACAACAACGGGAGTTCCACCTGCACAGTTACTCATGAAGAGGAAACCACGTGTTCTGCTCAATCTGTTACAACCGGATATCGGAGAGAGGGTCAGGACCAAACAGTCTCAGCAAAAGACAAGACATGATTATCATGCCCGAGAGAGAGAACTACCATTGGAAGAAGCTGTCTATGCTAGAGACTTCAGACAGAAGAAAGCATGGGTACCAGGAACCATCATCAAGAAGTCAGGCCCTGTGTCCGCTGAGGTACAGCTAGAAGATGGTACAGTCATCCGACGTCATCAGGACCACCTACGCCGCCGTACTGATACAGGCCAAAGGAAACTGGAGATGGACATACTGGATACCATGCTACAAGGACCCATGGCACTGACACCGGAAGAGGAAGAGCAGCCAGGTCATCTGGAACAAGCGGAAGAGCATAAAAAGTATATTGTTACCTTTCCAAACACGCCAAAGGACTTCAATATACAAGATTGCAGATTTAAGAGACCATGTAGCAAATGTGCCTCACAAGACCAGTTTAGTACTGTTATTTATGAAAGGCTACCTGATGTGGTAATTCTACATTTTGTAGAAGGTTTGAAGTCTGCAGAGTATTTAGACTATCAGTTTACTCACCAGAACAATAGCTATTGTTTAACACAGTTTATTCAGTATGTACAAGACCCTGATCACTTTATATGCTGGACTAAAGAAGATGATGGTTCAAGATGGCTGGAATTAGATGATTTAAAACCTCCACTATGCTCATGGTCCAGTCCTCCTAAAGTTTCACCCTCACAAATACATATTATTGTCCTACAGAAAGTTGTAAACAACAACACTGTATCACCAGAGGAAGGACTGGAAAGTCGGTTACACTGTAGTGATATGCAACATAAAGACAGTGAAGTTAGCAGTGAGAAGACTGAATGCACCAGAGATGATAAACCTGTCATCAAAACACAACACAAAGACATTGAAGTTAATAAACAATTATCAGAGAACAGTGAATGCACTAGAGATGATAAACCTGCCATCAAAACACAAGATACGATAACAATGCAGGATATCACTTCTGATTTACACAGTAAACTGAAAGTTGGTGCAAATGATCATGGAACTCCTGTAGTTAGTACTACCAAGAGATTGCCTTTAAAGAATTGTTCATCTGAGAACACAACACCAGTTTGTACTCCATCAATAATGAAGGACATCAAATGTGCATATCCTAAGACGCCTTTACAACCATCTTCATTGCAATTGGGTCACACATCGGGAAATTCTTTATTCAGAGTTGCTCTTAAACGACTGTCAAGTGACTCAAAAGTGCAACCCTTACTACCCAAGAAAAGAAGAACGTTGTTAACTCCATTTCAGCCTTATGTCCCAAAGAAAGAAAGACATCAAGTAGACCAAGTAACTACAGTATCTGAGAATGAAGAGAACCGTAAAGCATCAGATGATGCATTGAGCCCTACAGACTCTGAAGGGAGCTGCTTCTCTTCTAGTGATAGTGGGTACTCTAGTCCAAGTTCTGTTAGCTCTTGTGGAAGTACATTCAACATGGATTTGAGAAGCAAAGATGAATGCAATGATATTGCTGATCAGTTAGAGAAACTTCTCCCAGACTGTCTTCTAGATGAGATGACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAGCAAGATGAATTCATTCACAAGCTACTTTTTTGCGACTAG

Transcript

gene23893.t2

AATTGAACTTACTTTTACATTTATTGCCCTACAAAGTAGGCATAAAGGCTCACCGAGGGAACTATGGTTGTATTTTTCTGATAAATGGCGGTAAACAAGTTTTGTGAAGTTTGCAGTAAAGCCGGCTTAATAAGCAACATGGTGGCGAAGCAAGTGAACATGGAAGAAGCATTGCTTATATGTGAAAATATAGAGTGTGTGTTCCCATTAGGAACACCTCGTTTTTCTACCTTCATCATATCAAGATCACTGGATGAGAAGTCAAACTATAAACCAACTAGAAAGAACGTTGGACTTATAGTAGCAGAGAACAACAAAGCAGTACATGAAGATAAAAAGTGTACAAAGATTCTTCACTGGCAGAATGTTGATGCTCTGTGTTGGCTGGACAGTGCTTTAAGTTTACTTGTACATAACAGAACTATTAAGCAGTTGTTATCAAGAGTACAGACTTGTGAAAACTCCTTGTTAAACAATGTAGTTGATCAATACTCAAAAGCACAATACCTCTCAGAATTTGACTTGCCAAATGCAACCAAGGTATTGGAAGATGTCCGTAGTCTTGTGTGGACATATTTATGCCCTAAGATGAAATGCACTGTAGGAGTAAATGACTCTCCACTGTTCGCATTGTCGTTACTGTTTAGAGAGAATGCTGTTACTGCAGACAATTGTGTTCTACAATATACTTGTAAATTTACGTGCCAACAATGTGGACATAACGAAACAACCAGGTTACTACATTGGCGACGAGGTGAGACTATCTTATTAATGGAACACTTAGGAGAGACACCTGTACGTAGCAGTCAGATTAGAGATTGGACCGCAAGGGACCCAATCATCTCACAAGCAGTACAGTTCACTTTGGCAGGTTGGCCTACAGAGTGTACTTCTGATGAGTTCAAACCATATTTCCAACGGAAGACAGAGTTGAGTGTGGAAGAAGGGTGTTTGTTATGGGGGTCCAGAGTAGTTGTCCCACCCCAGGGAAGGTCAAAGGTACTAACTGAACTACATGAGGCCCACCCGGGAGTGTCACGCATGAAGGCTCTTGCACGCAGCTACGTTTGGTGGCCAGGGATGGATCAGGGAATCGAACAGGAGGTTAAGACCTGTGAGGCATGTCAGCAGCATCAGGTAGCCCCAGCGGAGGCCCCCCTGCACCCCTGGGAGTGGCCCGGACAACCTTGGTCCAGACTCCACATAGATTATGCGGGACCCTACATGGGAGAAATGTTTCTTATTGTAGTGGACTCCTACTCTAAGTGGTTGGAGGTGCACGTAATGAAATCTACCACATCAACTGCAACCATCGAGAAGCTGAGAGAGATATTTGCTACGCACGGCTTGCCAGAGACGGTAGTGAGTGACAACGGTACAAATTTCACAAGTGCTGAATTTTCTGAATTCATGAAAAGAAATGGCATCAAGCACATTAAAGTTGCCCCCTACCACCCTGCTTCTAATGGCCAAGCAGAACGTGCTGTGCGCATATTTAAAGAAGGATTTGTGAAGATGAAATCTGGAAGTGTGCAAACGAAGTTGTCCCGATTCCTTCTGAGTTACCGCACAACACCACACACAACAACGGGAGTTCCACCTGCACAGTTACTCATGAAGAGGAAACCACGTGTTCTGCTCAATCTGTTACAACCGGATATCGGAGAGAGGGTCAGGACCAAACAGTCTCAGCAAAAGACAAGACATGATTATCATGCCCGAGAGAGAGAACTACCATTGGAAGAAGCTGTCTATGCTAGAGACTTCAGACAGAAGAAAGCATGGGTACCAGGAACCATCATCAAGAAGTCAGGCCCTGTGTCCGCTGAGGTACAGCTAGAAGATGGTACAGTCATCCGACGTCATCAGGACCACCTACGCCGCCGTACTGATACAGGCCAAAGGAAACTGGAGATGGACATACTGGATACCATGCTACAAGGACCCATGGCACTGACACCGGAAGAGGAAGAGCAGCCAGGTCATCTGGAACAAGCGGAAGAGCATAAAAAGTATATTGTTACCTTTCCAAACACGCCAAAGGACTTCAATATACAAGATTGCAGATTTAAGAGACCATGTAGCAAATGTGCCTCACAAGACCAGTTTAGTACTGTTATTTATGAAAGGCTACCTGATGTGGTAATTCTACATTTTGTAGAAGGTTTGAAGTCTGCAGAGTATTTAGACTATCAGTTTACTCACCAGAACAATAGCTATTGTTTAACACAGTTTATTCAGTATGTACAAGACCCTGATCACTTTATATGCTGGACTAAAGAAGATGATGGTTCAAGATGGCTGGAATTAGATGATTTAAAACCTCCACTATGCTCATGGTCCAGTCCTCCTAAAGTTTCACCCTCACAAATACATATTATTGTCCTACAGAAAGTTGTAAACAACAACACTGTATCACCAGAGGAAGGACTGGAAAGTCGGTTACACTGTAGTGATATGCAACATAAAGACAGTGAAGTTAGCAGTGAGAAGACTGAATGCACCAGAGATGATAAACCTGTCATCAAAACACAACACAAAGACATTGAAGTTAATAAACAATTATCAGAGAACAGTGAATGCACTAGAGATGATAAACCTGCCATCAAAACACAAGATACGATAACAATGCAGGATATCACTTCTGATTTACACAGTAAACTGAAAGTTGGTGCAAATGATCATGGAACTCCTGTAGTTAGTACTACCAAGAGATTGCCTTTAAAGAATTGTTCATCTGAGAACACAACACCAGTTTGTACTCCATCAATAATGAAGGACATCAAATGTGCATATCCTAAGACGCCTTTACAACCATCTTCATTGCAATTGGGTCACACATCGGGAAATTCTTTATTCAGAGTTGCTCTTAAACGACTGTCAAGTGACTCAAAAGTGCAACCCTTACTACCCAAGAAAAGAAGAACGTTGTTAACTCCATTTCAGCCTTATGTCCCAAAGAAAGAAAGACATCAAGTAGACCAAGTAACTACAGTATCTGAGAATGAAGAGAACCGTAAAGCATCAGATGATGCATTGAGCCCTACAGACTCTGAAGGGAGCTGCTTCTCTTCTAGTGATAGTGGGTACTCTAGTCCAAGTTCTGTTAGCTCTTGTGGAAGTACATTCAACATGGATTTGAGAAGCAAAGATGAATGCAATGATATTGCTGATCAGTTAGAGAAACTTCTCCCAGACTGTCTTCTAGATGAGATGACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAACAAGATGAACTCCCAGACTGTCTTCTAGATGAGATTACTGAATTGAAACCAATACATGTATCATATGAGCAAGATGAATTCATTCACAAGCTACTTTTTTGCGACTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P03360	Gag-Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus OX=11636 GN=pol PE=1 SV=2
Q3ULM6	SUMO-specific isopeptidase USPL1 OS=Mus musculus OX=10090 GN=Uspl1 PE=2 SV=2
Q6DRC5	SUMO-specific isopeptidase USPL1 OS=Danio rerio OX=7955 GN=uspl1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000022 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF15499 all species →	Peptidase_C98	Ubiquitin-specific peptidase-like, SUMO isopeptidase	Family	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR028890 all species →	Domain	Ubiquitin-specific peptidase-like, SUMO isopeptidase	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032183 all species →	Molecular Function	SUMO binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gene23893.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.