Gene detail

Detailed information of gene23920.t1 in Actinoscyphia liui

Genomic Location: chr7:4991765...4999574
NR annotation: XP_020898341.1, sialin [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene23920.t1

CAAGCGTCGAGCGATATACTTGAGCTCTTTAGCTGTGTTATTATCCCTACTTTCTGAAACCCTTGACATGGAAGATAGTGCAAAGACTATAGCTGGCTTTTCTGGTGTAGATTGTCCCCGTAATAGACATAGATGCAGCATACCATGCCGTTATTGGCTCTCGATTCTCGGCTGTTTAGGGTTTGCTGTGGTGTACGCTCTACGTGTGAATCTCAGCGTTGCTTTAGTGTCGATGGTCAATTCTACTGCAAGGGTTAGTGACTATCAACATACTAAACTACCAGCCAGTAGTCAGAGAGAACAATTTGATTGGAATGAGGAGACACAAGGTATTATTCTTGGCTCGTTTTTCTATGGTTATTTAATCACTCAAATACCTGGTGGATGGCTGGCGTCAAGATTTGGTGGTAAACATGTATTTGGCGTGGGTGTGCTGTGTACCTCTATATTCACTCTGTTGACTCCATGGGCAGCACGGCAAGGAGTTGGTGCATTAGTAGCTGTACGAGTGATGGAAGGAATAGCGGAGGGTGTAACCTTCCCTGCCTTGCAAGTACTGTTGAGTAGCTGGGCTCCTCCATTAGAACGATGCACACTAACCAACATTGCAAATGCAGGTACTGGACTAGGCACCATGATAGCAGGGCCGATATCAGGGATTCTGTGTGCATCAAGTTTTCTTGGTGGATGGCCTTCTGTATTCTATGTATTTGGTTGTCTTGGCATAGTATGGTACGTTTCGTGGTTGTTGTTAGTGTTTGACAAACCCACTACTCACCCACGAATATCAGCCCAGGAAAAACAGTATATTGTAACTGCTATTGGATCAGCGCAGGATAAACTAGTCAAGATCAATCCTATTCCTTGGTCAGCCATGATTAAATCGCCTGCTGTCTACGCTATCGTTATCGAAACTTTCTGTTCTGGTTGGGGGTACTACACATTGCTTACAGCTTTACCATCGTACTTTAAAGATGTCTTGGGATTTGGGATTCTACAGATTGGCTTTATGTCATCGTTACCATACGTGATTGGCTTCTTCACTGCTTTGTCATGTTGCTATGGTGATGTCCTTGTCGCTAAGAGAGTAGTCACTGTTACTGAAATAAGAAAACTATCAGTCGTGGCAGCATGTGTCATACCAGGGTGTCTTCTACTGGCTGCGAGTAACGTGGGACGACAAGGTGCTACGTTAGCTGTGGTCCTGATATCTTTAGCAGTTGGCTTCGATGGCTTGAATTTAGCAAGTGTTAACGGCATTGATCTCGCTCCTCGCTTTGCGGGGCTACTCATGGGCATTGCAAATAGTTTTGGGACCATTGCAGGTTGCGTTTCGCCCTTGCTTACTGGCTGGCTTACAAATGATGAGCCAACGGCTCGTCGTCAGTGGCAAAAAGTGTTCTATATCTCAGCAGCAATCTATGTCATTGGTGCTATAGCATATGTTGTGTTAGGATCTGGTGAAGAACAACCTTGGAATACACCAGAACATGAACTTTTTCAAGAAGTTGACATTGTACGTGAACCACGGACACCGCTCTGTTTACCTGATAGCAATTCTTTACAGTCCACAAGCAATATCAAAGTGTAAAATGTTTAAGGTCAGGTAAAGATTGGCACTGTAAGGCCAACTGCAAGGACTACTTAGATATGGGTTAGGGTCGTGGCTATGGTAACCGTTGTTGTATGGGCTAGTCGCTATGGTAACCGTTGTTGTATGGGCTAGTCGCTATGGTAACTGTTGTTGTATGTGCTAGTCAGGGGTGGATCTAGGATTTTGAGTAGGGGGGTTCACCTTAGATACAAATTTTGTACGTAACTTATTTTGTATTAGATAGAAATTATAATGTTTTTAGGTAGGAAAAGGGGTGCACGGGCACGCTGTGTACCCCCCTAGATCCGCCCCAGCTAGACAAGAGTTTGGTAAGGCTAGAGGTTGTGTTAAGGCTAGACAAGGGCCGGTTAGTGTGAGATTTGTATTTTATTTTAATTTTAGTACGTTTGTTATTGTAATATTTTCTTCTTGAGCGCCTAGAGCAGTTCTGGATAGGCGCTTTATAAATAGATATTATTATTATGTTAGGGCTAGATACAACGTAAACCGTTAGGAATATAAGTTAAGGAAATCAATGAATATTACTTCAAAAAGATAAAATACATTATTTATTTCCAGTCTTTCGCTATGTTACACGTTATAAATCTGACTTCTTCTCATTCATTTCTCATTATAAGAAAAACAATTCAATAGAATAGTGCAATGCAGTCAAGGCATTCCAAACTCAAAGAGGGCGTAATCATTGATCATATCGCAGAATGAAATGTAATTAAAATCATGTTTAAGTCCGATAATGACGTCAAACTTCTGATACAGCACGGCAAACTCTCTAGCGCTCACTAGTGTCCCTATGTCTAGCTCGCTTAGTACCCGGTGGAACTGGCCGCGTGACACGGTGCCGTTATGCACTCTGTCGTAGTCTTCAAAGAGCGGGAAAATCTGGATACGTCTGATGCGTACACGGTCGGCCAATCGGTGCATTACTTGTTCAAGCAGGATCTCCGCTTCCGGTAAAAGCTTCGTGTTTTCGCTCTCTACGTGTGTATTGAACTGTTCAGGGACAGCGAGAGGATTCTTTTCTAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BN82	Sialin OS=Mus musculus OX=10090 GN=Slc17a5 PE=1 SV=2
Q5Q0U0	Sialin OS=Rattus norvegicus OX=10116 GN=Slc17a5 PE=1 SV=1
Q9NRA2	Sialin OS=Homo sapiens OX=9606 GN=SLC17A5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000298 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050382 all species →	Family	Major Facilitator Superfamily Sodium/Anion Cotransporter	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11662 all species →	SOLUTE CARRIER FAMILY 17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12301	SLC17A5; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 5	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.