Detailed information of gene23971.t1 in Actinoscyphia liui

Genomic Location: chr7:5673465...5716288
NR annotation: XP_028518081.1, E3 ubiquitin-protein ligase MIB1 [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q68LP1E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus OX=10116 GN=Mib2 PE=1 SV=2
Q9VUX2E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster OX=7227 GN=mib1 PE=1 SV=3
Q80SY4E3 ubiquitin-protein ligase MIB1 OS=Mus musculus OX=10090 GN=Mib1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000489 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06701
all species →		MIB_HERC2Mib_herc2DomainInterproscan
PF13920
all species →		zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF18346
all species →		SH3_15Mind bomb SH3 repeat domainDomainInterproscan
PF00569
all species →		ZZZinc finger, ZZ typeDomainInterproscan
PF12796
all species →		Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002110
all species →		RepeatAnkyrin repeatInterproscan
IPR036770
all species →		Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR010606
all species →		DomainMib-herc2Interproscan
IPR040847
all species →		DomainMind bomb, SH3 repeat domainInterproscan
IPR043145
all species →		Homologous_superfamilyZinc finger, ZZ-type superfamilyInterproscan
IPR000433
all species →		DomainZinc finger, ZZ-typeInterproscan
IPR037252
all species →		Homologous_superfamilyMib/herc2 domain superfamilyInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24202
all species →		E3 UBIQUITIN-PROTEIN LIGASE MIB2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene23971.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP