Gene detail

Detailed information of gene24281.t1 in Actinoscyphia liui

Genomic Location: chr7:9459498...9470786
NR annotation: KXJ17932.1, Caspase-2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene24281.t1

ATGTCGAACGCGCAAGTAGAAATTCCTACAAATTTGAATTCGCTGTTTCGGGACATCAGCAAGACTTGTACCGAAGAGCAGGAAACTATGATTATGGCCGATTTGAAGAGAGTAATAGACTCCGAATCAGACAATTTATATGGAGCGTTATCAAACCTGTACAAGAAGGGAGTAATCGATGAGAACGACGATGAGCATTATGGACTGACTTGTCTTCAAAGTATAATGGAGAAAGTGGAAAACAAGCAGTCCTCAATGCTAATCCAGGAATACGAGCGATCGCAACTGCCTTCAAAAGGCGATCAATTAATCGGTAGACAGAGGGATATTGACAAGCTCAAAGAGAATCTCTCTGATCACAATGTGCATGGAATTAACTTGTTCGGACCGTCAGGGGTAGGAAAGACAAGATTGGTGAGAGAGATTGCCACAAAAAAGTTAGAGTTCAGTGATCAAGACATATCGACTTTTTTAGTTGAATTGACAGCAATAACGACGATGAGTAACTTGTATTCCTCTCTACTTTATGAATTCAAACTAATCACATATGCGACCAAGAACGACCAAGAACAACGAATGCAGTCCGCGATTAGCAGCATATCCGTTACTGAAAGGAATAGAATCATTAAATTCCTTGAACATCTCACTTCAAAAACTTTGTTGATCCTTGACAATATCGAGCAAGAACTCATACAAAGTGACGAAGAAGATGAATTTGAGGAGTTCATAAATGCCATTCTACATTCTAGGGTCATCCAAGATGGAACACTGAAAGTTATTCTTATTTCTACAGATAGAATTAATTTTCAAAAGGACTTCAAATCTATCAAGGCCCAATGCGTCAGTCCATTGCCCAAGGAAATCTCGAACGAGTTCATAACAAAGAGGTCAAAAGTTTACATGTCAGAAGAAAGTGAAGACCAAGCACTGAATAAGATTGCTAACTATTGTCGACACCTCCCTTACTTACTCAAAATTGCAGAGGAAATGATGAGGAAAGATTTTTGTACCCCACGGGAGGTGTTACAAGAGATTGAGTCACAGATTGGAAAAGGGGTTCATAAAGAGTATGCTTGTATTAGAGCCTCGTTTGAATCAATTTCTAGTGATCACCTAAAAAAGCTTGCAGTGAAGTTATCGATACTTCGCTGTCCATTTTCAGTGTCAACAGTAATGAAAATTGCAGAGATTCCATTGGATTACTATGCCACGATTGATCTTGAGCTTCTGGCCAAACAAAAAATAATAACAAGAGTGGAAAGGGAAAAGAAATATGATGAAATGAAGAAAGAAAAGAAGTGGAAATATGAGGTTCATAGTTTATTCCATGAATTTGTTACTTCATCCCTAGTACCTGGTGTTCCAATATACAAGGAGATCTACAAGAGGACAGAGAAAATGTTTGCACAGCATTTTTCATGTAAAATGAATGCATTGGCCAAAAATTTGGAGAAAGATTTTGTTCAAACTTTCATAAAAATGGAAAAGAACAGAGTGAACATTGATTTGACTCTTGATCTAGCATCCACCAATAAAGAAATCATCGAGCAGCTTCTTCCATCTCAAGATCATGAAGCAGCTTGTCGTCTAGTTCTTCTCCTAGAAGCGTTGAAAGACTTCAACGAGAGAAGGAAGTTATTGAAGACATGGGCAGACACCTTTGAACAAGAAGAGAAATGGCTGATAAGTGCAAACATGAGATGTTGGCAAGCAATTCAACTTGCTGATATGGAAGGGACGAAAAATCCAGAAAGAATATTGCAAGAAGCTAAGGCATGTCTAGACAAAGCAGCCAAAGCAACAGATCCTCCTTCAGATCCTGATCAGCTTCAAGCTGGCAACGCATTATTTCAGTTCTGTCGTGGAAAGATACTTTACATGAAAGGTGCAAATAGTGACGAAAAGAAGATCAACAGAAAGCTGATCAACGACGCTCTTCATGAGTTGGAGGCATCTCTAGTCATTTATAAATACCTGTATGGCAACCACACTACCATGTCCGTAAGGGCACTGAATCTCCAAGGCAACTGTTTTATGGAACTGGATGACCCCGACAAAGCAGAGAAGGTCTACACAGAGGCATTGGAAATGAAGATCAAACTCACTCGTACCGAAAAACACTGTGAAATTGCAACGCTTTATAACCAGTTATCACAAGTTCATGACAAACGTGGAACGAAAGAAGAACGAAAGTGGTATAGTTGGTTGCCACCGGTACGAAGATCGATAAAGAAAGAGTATGAAGAAGCAGTTAGATGGCTGCAAAAAGCCCTGGATTTAGACAGAGAGCTCAATTTGAACGACATCCTAAGCTCAGCGACATTGAACAGGAATCTGGCTAATGTTCTGCTTGCACTTGAGCGGTACGACGAAGCATTGGCACATGCCGAAGAGTCGTATACACTAAGGAAGGAGCTCCTTGGTAAACACCCAGAGACCGTGAGAATTCTGTTTTTGATTGGAACAATCCACGAATGGAGAAAGAACAAAGAGAATGCGTTAGAAAGTTACGAAGAAGCGTTCATAATTGAAGAGTCCTTGCCTCAGGACAATCACAGTGTTGTGAGATTTAGACTATGCGACCGGTTCAAGAAAATGTGTGAAAAGTGCAACAAGGAAAAGCTTCAAAATTACAAACAAAGAATTTCACAAATGCAGCAGATAAAGCAATCTTCATCAACACTAGATGATACAAGATCAAGACTGCTGGACGACGCATCAGAGAAGATGGAAAGCTATCAGGAAATCAGTTCTGAGATGAGTACAATATCAGTGAGTACATATGGAGGTACCTACAATCTTCTAAGTCAGGGACTTTTCCTTGACTTCCCTCCAGGAGCTGTTGACAAACCTACTGAGATAACGGTTGAACTACTCAACAAAAATTCCTTACCCTCCCCTTCTGGGGACATGGAAACTGTTGTTAGCTTCATTGTGAAAATTGGTCCGTGCGACGTTGTTCTTCAAAAGCCTATTGTTGTTGAACTGGTGCATTCTGGTTGCGTTGGACTTGGTCACTTTGAAAACAGAGCGATAGCGTTCAATGAGTCTATTAGGACATGGCGAGAAATACCAGAACAACACACTTTGCATCCTCCGATAAAAAGCTACGAAACAGAACTCATTCAAGTACAGTTGGCCAAGTTGACTACTTTAACAGTCGTCAGCAGGCTCATCACAGATACCTTTGAAGTCCCAGTCGGTGGATGTTGTGTTAGATCTTCTGTACATCCTGGTATCCGACTTGAATTTCCTGAAGGAGCTGTTGATAGAACTATCAATGGAAGCTTGAAGGTATTGCCGATGCCAGATGCTATACCGAAAGACATTAATGCTTGTCCCTCTCCAATCGTTATTGTCAATATCTTTCCAAACGTAATGTTCTCTAAGCCTGTAACGATGCGACTCCCCCACCCGTGTCCTGCAAAATATACCTCAGGAGAACTTCACTTAATGCACCTCGAGGATGGAGCTGGAGCTCGAGGGGGGAAATGGAAGGAAAATACCGAGACTGTTTGTTACACAAAACACGACTCGACGATTGAGCTACAAATAAATCACTTTTCTTGGATTTGGCTGTTGGTAGGAGTCACTATTTCTGCGAGTGCTTTAACTGCATATCAGCAGTTGACTGGCATACCCCAAGTAGTATGTTTCGTTGCTTTCTGTGGCCCAGACAGTGTGGATGCCAATACTGGAGTAATAAAACTTACACTCTTGTGCATGGCCAATCACATGAATGATAGAACAGTTCAACGAATGAGAGAAACATTTGGAGAAGATTTCATACAACTTGCCCAAGCAACAGGAAAAAAAACGATGCTACCAAACGAAACAGTTTATATAGCAGTAGAAGATGGAAACTTTATGTCTAGAAACGAAGTTCAGCTGCAATTTTTAGGTGATGACATTTGTGCAAAAGAGTTGGTTATCGAAAAGAAAAAAGAACAAGGAAAAATGTCCTGGTTCTTCATCAATTTATTGAAGAAAGATTCAGACAAAACCGACATTTTGGGACAGCTTATTATTGATGAATGTCGATTCAGAAATTTGAAGAGGAGAAGATCGGGTGTCCCACCAAGTACCACAGTTCCTCCATTGATGAATTACAGGTCGATCGAAGATCCAGACTCAGAGGAGGTTTACAGTGTGGAGAGCATTCCAAAAGGAATATTGGTCATTATTGAAAACGAAACATTCCGATCTGAAAGACCGCTGCTTGAACACCGTGCAGGTTCCGAAAAAGACGTGGAAGCACTTTCCAATGTATTTTGCCGATATCTAGACTTTAAAATGAAATACATTCGCAACCAAAACAAATGGGACCTGCTCACAAAACTGCGAAAAATCTTGGAAGACCCAAATGACAGAGTTTCCGATTGTTGTGTTATTTCTGCCATGAGCCATGGCGTAAATGGGTGTTTTTACGACATCAACGGAAAGGAAGTGAAGGTGTCACAAATACAATCCATCGTCAAGGAACTGTTTGTAGGGAAGCCAAAACTGATCTTCGTCCAGGCATGTCGCACGAAAGGTCCTGAACCAAAGAACCGCCCAAAGCAAAGTGTCACTCACAACTTCTCACCACCAGTTTCTACAGTGGAAACTACTAGCGAAGACCTGAGCTCATCGCAAGTCACTCACAACTTCTCAACACCAGTTTCGACAGTGGAAACTACTAGTGAAGAGCTGAGCTCATCGCAAGTCACTCACAACTTCTCAACACCAGTTTCTACAATGGCACAAACTACTAGCGAAGACCTGAGCTCATCGCAAGTCACTCACAACTTCTCAACACCAGTTTCTACAATGGAAACTACTAGTGAAGACCTGAGCTCTGGAGAGAGTAATTCGTCTCAGACGTCTCCCACTGATGATAAAATCAAAGAAGCTGATATCCTTACAGCTTATGCTTGTTGTGAAGGGAGCGAGGCATCTCGATATCCTGAGAGGGGGTCACTTTTTATTCAAACTTTAGCTAAAACGTTTGAGGAAAAAGCGGATTGTATGGATGTTTTAAGTATGCTCACGGAAGTTAATAATGATGTTTTTGAAAAGTCACGATTTATACAGCCGTGTGAGATTGTTTCAAGACTTACGAAAAAATTGTACTTTTGGCCAAAGAAGACGTCATAA

Transcript

gene24281.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00791	ZU5	ZU5 domain	Family	Interproscan
PF20703	nSTAND1	Novel STAND NTPase 1	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF00656	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000906	Domain	ZU5 domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001309	Domain	Peptidase C14, p20 domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR049052	Domain	Novel STAND NTPase 1	Interproscan
IPR015917	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR029030	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR052039	Family	Caspase-related proteases and regulators	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR002138	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan
IPR011600	Domain	Peptidase C14, caspase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22576	MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan