Gene detail

Detailed information of gene24345.t1 in Actinoscyphia liui

Genomic Location: chr7:10500837...10508450
NR annotation: XP_020908481.2, pumilio homolog 2 [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene24345.t1

Transcript

gene24345.t1

ATGGTGTCGGGGGGGTCACTACCTGGGTCCCATTCCTTTAGTTCATCGTCTTTGCAGCATCTCTCACCTCAGCAGCAGATAGCTTTAGCAGTAGCAGCACAACAACAGCAGCAGCAACAGCAGCTAGGACTCCAGTCTGCGTTGGCACAGCAGAACCCATATTATATTGCCGCTGCAGCAGCACAAGGACAGGAGATGTACGGTAATGGGTCTCTACCTCAAGTCAATCCAGGAGCTCAGATGGTTCCGCCTCCCTACGCAGCAGCAGCCTACAGTATCCAACCGTGGGGAATGTACTCTGGGGCAGCTAACAGCGGAAACTACTTGCAACAGCAGCAGCAGCAACAACAACAACAGTCGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCAGCAACAACATCAACAGCAGCATGCACAGCTAATGAGAAGCACAAGTAACTCTGGTGTGGGTGGACAACCTAACCAGATTGAGCTGATTAACAGCCCACAGCAGCCTTCCATGCCTGCTAATGCCAACTACCAGATAATAGCACCCCCAGGGGCACCCCCCTTGGGTATTGGAGCAGCTGCCTATTATGACCAATCTGGGAACCTAGTCCTGAGCAACGCACAGGGAATCAATGGTGTTTCTCCACAGCAGCTGGCCGCCAATCAAATGGGAGGAGCACTAAGAATGATGTCGCCTATGCTACTGAATGCCGCCAATTCGCCTGGAAGTTCAAGTAATGCTGGTGGACGAATGGCAAGCAATTCTGGGGCATCAGCGATGCGTATGTACGGCCAGCAAGCCCAACAACAGATGTCTGTGAGTGGACCCAGCTCTATGAATTCCTACCAAAACCAACTCCCTATGAATGGTAATACAGTGAATGTGGTTGGCAATAATCTTGGGATCCTTAGTGGGTCTTCTAATGTGGGAGCCGTGGGCTCTGTGAGCGGGAATTCAAGACGCGATGTCCTGGGCAGCGGTGACTACAGCGCCTTTAACAAGAGACAAACCATCCAAGGGTACTACCCTAGCCTTGGTGGCGCCCTGACAGTTTCTGCACAGCCTTCTTATAACGCACCTCAGGAGCTCCCCACCCCACCCCTACTATCCCAAGGTAGCCAGTCAGGCTTCTCTGTAGGAGGTAGCCCCATATCAAGTGGTTTGTCCCGCTACATGCAGCTAGCATCAGCTCCAGATAAAAAGTTCCAACAGAACCCCCTGAGCAGCTTGAATGGTGGTTCCTCGTTTGGAAACTCTGTCCTCGCGACAGGAACCTATCGGGGTGGGGGTGGGGGTGGACGAATGAAGGATACTGGGCGATCAAGACTTCTGGAGGACTTCCGTAACAACCGCTATCCTAATATCCAGCTACGAGACTTGGCAAATCACATTGTGGAGTTCTCCCAGGATCAACACGGATCTAGATTTATCCAGCAAAAATTAGAACGAGCGACTCCAGTGGAAAAGAACATGGTGTTCCATGAGATACTGCCTGCCGCTTACAACCTTATGACAGATGTGTTCGGCAACTACGTGATCCAGAAGTTCTTTGAGTTTGGTAGCGATGAGCAGAAACACCATCTAGCGACGTGTATCCGTGGTAACGTTCTACCCTTGGCTTTACAGATGTACGGGTGTCGTGTTATTCAAAAGGCCCTTGAATGTATACCGCCAGGTGTCCAAGTGAAGCACGATCTTGTCATGGAGTTGGATGGTCACGTGTTGAAATGTGTCAAAGATCAGAATGGTAATCACGTGGTACAGAAGTGCATCGAGTGTGTCGACCCCCATGGACTACAATTCATCATTGATGCCTTCCAAGGACAGGTGTATGCTCTATCCACCCACCCCTATGGCTGCCGTGTTATTCAGCGAATCCTAGAACACTGCCTACTAGAACAAACCATGCCTATACTGGCAGAGATGCATGATCAGACTGAACGCCTTGTGCAGGACCAGTACGGTAATTATGTCATACAGCATGTATTGGAACATGGGACTCCAGAAGATCGGAATAAGATTGTTATGCAGCTACGAGGACATATCCTTCCGCTCAGCCAGCATAAGTTTGCTAGTAACGTGGTGGAGAAGTGTGTAAGCTTTGCTTCAAGAGCCGAGAGAGCATTGCTTATTGACGAAGTCTGCAATACAACTGACGGTCCACACTCTGCTCTGTACACGATGATGAAGGACCAATTTGCGAACTACGTTGTGCAGAAGATGATCGACGTTGCGGAACCCGTTCAGCGCAAGCTCTTAATGCACCGCATTCGCCCTCACGTAGCTACGTTACGTAAGTACACGTACGGAAAGCACATCCTGGCTAAGCTAGAGAAGTACTACATGAACGTGAAACCAACTCCAGAGTTCCTGCCGCTGTCCAACGGCCAGTTAATGTAGTGGGCTCGTTATTTACGTAGATTCTTATTCCAACTCTTCCGTTTTTAAATCAAATTTAAAGAATCGACTTAATGCATCTAAGTGCACTTAATAGTAGTGTAGATATCAATAGATTAATTCTTACTTGAGTACAGCGCTCTCGAAGTACAATTGGGCTTCCTGTGCTGTAGTACCCAGGCCTGTTAATGCCGCTGCTACCACAGGAATCCCAAAATCGAATGTTTGTTAAAAGTTAAAAATCTCGCAAATTCTCGTCACTCTTTCAAACAAAAAGAATTTAAACAATATAAGGAAAACTAGTCAGGATTACTAAGACCATGATTTTTAACTAATATATATTTTACTTTTATAAAAATAATACTTTTTTCCTTCTGAACAAAATTTCTAGTTAGAATTACTGTATTATTGTAAAGCCTTGTAAAATGATCGATTTTCCGTTACAAATTACTATATACTTTTTGATGATATGTAATTAGTAGAAGATTGGGGGGCCTTTAGCAGTCAACACTGAACTATTTTTATGAATATCCAAGTCAACCAAGCAGAATATTACTTGTATATTACTTATATAAACTTTGTAGGATTCCAAGAAATACTTTTACTTCAAACTTTTAGGATTTTAGAAGTCCAACTTGTATCTTTTAATACTAGATATTATACCAGTTTTAATGACCTCGTTGATAGTTTTTTACTTAGATTAGATAAGATTACTCGATTGCCACACCCGAGCAGAAGTAATGGAGATAATATTAACAATTAAACTTCATAATTAAATCATTAATAATATTCATTAATGATTATTAACCACATATTGTTACAATACCTCCAATACTTAGTCCTCGGTGTGTAAAAACTGGTATTTTTATTATCATAAGCATTAATCAATCCCTTTTTGGTGTGACATTGTCTCGACACACTCGTGAAAGAACTTGCGCTTATCAGAACAACACACTGGAAATTTTGGACTATTTCTAACCGTTAGAAAAACGTTGGAAATGGACAAAAGGTTAGAAATTTCAATTTCTAACAAATTTCTAACAAATTTCTAGCAAATGTCTAACGGTTACAAATGGTCCAAAATTTCTTATGCAAGTTGTGTGTTTCATTCCTCCAGTAGGGATTGGTTAAGCTATGTGCTTTCTAATCATGTCCAAGAAAAACTACAACTCTAATGCTAGATAGGATAAGTCGTGGCTGCTATGTTGACTTGGACTACCATTCATAGTCCCGTAATTGACCAATAGAAGTCACTTGTAATGTTTGTATAAATTTTTGCTTAACACAGGGATCCCACACCCGCCTGTATATGTGTACATTATGTAAATGAGGGATCAAGAGGGGGGAGTGGTTTGTTATTGTTTGTTAATTATAATATACGCCCTATAAGAGTTCCTGTACAAATTGCGTAATCATTGGCCGAACCCCCCAGTCGTTGTATGTTTGTGTAGGAATTTAATAATCCCAATAGAGTACATTTTCTGCAGGCATGCTGTAAATTATACAGAAATTCTAGGCATTTTTGATGGTGCTTTTTCGTAATGTTCATAATATATATGTATGTAAGGATTGTGAAAATAATTGACGATCAATGGATCTCTTGTGGATAACTAGAGCGAAACTATGTAAAGTTTGATAAGAAATATTAACCGTTGTAGGTTGAATTAAACCCCATTGTAATTAATTTCAAATGAAATGCTCCTTCAAAGAGCGGGTGACGGGACTCACCGACCCAACATAGTGTGAGTTGCACTATTTTGTAGTAAATTGTAATAGTCATGGTGTATACTTACATATTATATTATCTATAGCCTTGTAAAATTGTACGCAGTTATGTAGAGAACTGTACATCTTGTAAAGGAATTATAATAGGTCATTTTCAAATGTTGTATTAAAATCAATGAATAGTGGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TB72	Pumilio homolog 2 OS=Homo sapiens OX=9606 GN=PUM2 PE=1 SV=2
Q80U58	Pumilio homolog 2 OS=Mus musculus OX=10090 GN=Pum2 PE=1 SV=2
Q66KI6	Pumilio homolog 1 OS=Xenopus laevis OX=8355 GN=pum1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003727 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00806 all species →	PUF	Pumilio-family RNA binding repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001313 all species →	Repeat	Pumilio RNA-binding repeat	Interproscan
IPR033712 all species →	Domain	Pumilio, RNA binding domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR033133 all species →	Domain	Pumilio homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12537 all species →	RNA BINDING PROTEIN PUMILIO-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010608 all species →	Biological Process	post-transcriptional regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17943	PUM; pumilio RNA-binding family	-	Spinocerebellar ataxia	ko05017	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.