Gene detail

Detailed information of gene24394.t2 in Actinoscyphia liui

Genomic Location: chr7:11376339...11408959
NR annotation: XP_031559003.1, kinesin-like protein KIF13B isoform X1 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gene24394.t2

ATGGGCTCAAAAGTAAAAGTTGCCGTAAGAGTACGGCCAATGAACCGGCGAGAGGTTGATCTCGGGGATAAAGTCGTGGTTGATATGGTGGATGGCACTCAAACAATTCTGTCTTCCCCGAGAGACAGAAAACAGTCCAAGAATTTTGCCTTTGATCACTGCTTCTGGTCCATTGACTCTACTAACAGTAAATATGCAGACCAAGAAAAAGTGTATGAGTGTTTGGGGAAAGATGTTCTGGAAAATGCATTTGAGGGTTATAATGCATGCATATTTGCTTATGGACAAACAGGTTCTGGTAAGACTTACACTATGATGGGAGGCCATGAAGATAAAGGTGTTATACCAAGGCTGTGTGACAATCTGTTTGCTAGGGTATCAAAGAATGACAACCAGGATGTCAATTACCGTGTTGAAGTATCATACATTGAAATCTACAATGAAAAAGTTCGCGATCTTCTTTGCCCTAGAGGAGGGAACACTGCCCTTCGTGTGAGAGAGCACAAAGTACTGGGACCTTACGTGGAGGGTTTAACTAAGCTTGTTGTGTCATCTTATGAGGATATAGGGACGATAATGGTGGAAGGGAACAAGTCACGTACTGTAGCCGCTACTCGCATGAACACAGAAAGCAGTCGTTCGCATGCAGTATTTAACATTGTACTGGCTAGAACAGAGTATGACCCTGGATCAGAGTGTATTGGTGAGAAGGTCAGTAAAATGAGTCTTGTTGACTTAGCTGGTAGTGAGAGAGCAAGTAAAACAGGAGCTGAAGGAGAAAGACTTAAAGAAGGGAGCAATATCAACAAATCTTTGACTACACTAGGACTAGTTATATCAAGTTTGGCAGACCAGTCATCTGCCAAGCATCACAAGAAAGGAGCTCATTTTGTACCTTATCGAGATTCAATACTGACGTGGTTGCTGAAGGATAATCTTGGTGGAAATAGCAAGACCGTCATGGTTGCTACAATCAGTCCATCAGCTGATAACTATGAAGAGACACTATCAACCCTTAGATATGCTGACCGTGCAAAGAGGATTGTGAACCATGCTGTTGTTAATGAAGATCCTAATGCTAGAATCATCCGTGAGCTCAGAGAAGAAGTTGAACATTTAAAGCAACTGCTTCAGCTGAAAGTAGCTGGCAAGCTGTCTGCTGAAGAAGAAGGTGAATTTGCAATCCAGGAACAGCTTACAGAGAGTGAAAAGCTTATCAAAGAATGCACAATGTCCTGGGAACAGAAAGAGAAGCAGACAGAGCAAATCTTACAGGAACGACACAAAGCTTTGGAAGAAATGGGAATCTCAGTACAGTCATCTGGCATTGCTGTTGAGAAAAGCAAATTTTATTTAGTTAACCTGAATGCAGATCCATCAATGAATGAATTGCTTGTGTATTACTTAAAGGATCATACAAAAGTTGGACGTCTTAATCCAAACTTGCCTCCACCGGACATACAGCTAGGCGGTCTTGGTATACTACCAGAACACAGCACCATGGACATAGAAGGGAATGAAGTCTATCTGGCTTCCATGCCAAATGCCAGAACATTCGTAAATGGTAAAGATGTCACAGAGTCTACTCTACTGAAACATGGTGACAGGATTCTCTGGGGTAATAATCACTTCTTTCGAATCAACTGTCCACGGTCACCTGGTAGCGAAGTCCAGCCTGAACAACATGGTGACTTCATGTCAGCGCAGCACGAACTAATGATGAACCAGATTGTACAAGGTCCCCTACATGAGTCAATCAAGGCGTTAGAAGAACAGTACCAGGCTGATAAACAAGGTGCACTTGAAAAACAGAGATTGATGTATGAAGAGAAAATTGAAGAACTTCGCAACCAAGTTCAAACAAATCGTCCATCTGGCATGGATAGGACTTGGAGTATGGGTTCGTTCAGTTCAGGTTATGGTTCACGCATGTCCTGGTATGATGACAGAGAGACGTCGAATCAGTTTGAGAAGCCCGAGCACCGTCCACTTGTGCTCAAGGAGGCTGTGCTACAAGCTAATACACTTGTCAGAGAGGCCAACCAACTTAGTGAAGAAATGTGCAAGGAGACAGATTTCACCGTCACCTTACAGATTCCTACCTCCAGCTTGAGCTTTGGCAGAAGTCGGTCAGGGTTTAGTAGTGAAGTGGCCATCGTTGTGAAACATAAAAGCAGGGGAACACAAATTTGGTCTCTTGAGAAACTGGAAAACAAAATTTTTGATATGCGAGAGCTGTATAACCAGTGTGTTGACGAAGGTGTTTCATTTAGCAGCAAGGACGAGGACTCTGATTTGTTCTTTGAGGTGGAATGCCACACCCTAATTGGCGTCACCAATGTCTTCCTGGAATGTCTTCTACACGATGTCAGTCACGAATATGCTGCACCAATCATAAGTCAACAAGGAGAGGTCTGTGGTCGACTCAAAGTTGAAGTTTCTCGAATTACAGACAAGGATTCCGACAGCGAATCTGTGGAGTCGACCGAGTCAGACGGCCGAGTAAGTCCAGAAGATGATGAAATAGAAGGAACCAACTTAGAAGACTTCAAACTTGGTCATCGTATGGAGGTCTCTGTGAATGTGATTGAAGCATTCGACCTACCGCCAGCACTGTGCAACTACGTGTTTTGTCAGTACCAGTTGTGGAAGGATAAAGACACTGTGGTTGTTCCCCCAATCAACGCGAGCCTATCTCATCCTGGACCTAAAACTAATACCATGATATTTGAGAACAAACAGGCATTTGATATCGAGATAACGGAAGACTTCCTCGAGTATGCCTCAGAGGGTTCGCTTGCTGTTGAAGTATGGGGAAATCGAAGTCAAGGTTTTGATTCTAATAGTAAACTTAACTGGAATTACAACGTAGAAACACCACAGAAAGGACTCCATGATAGGTGGCACGAACTTGTTCGTAAAATCGATTTCTGGTTCGAAGTGCAAGAGATCAACGATATGGGTGTCTACGCGCCCGTAGAGCTCAACACTCGGGAAGGAAAAGAAACTGGGGGGATCTTCCAGATCCGACAAGGCCACTCCCGCCGCGTGGTAGTCAAAGTGAACCCCATCCCTAAGGCAGGGGCGTTGCCCGTCGTGTGTAACACCATCACCAGTGTGTTGATAGGGAGTATATGTGTTAGGAACAAGCAGCAACAAGAATTGGATAGTTATCAGGAGAAAGATTTGTCATTATTACGAGAGAAGTGGTCCAATTCCTTAATGAAAAGACGTGAATACCTGGATCAGCAAATCCATTCATCCATAGGAAACCCAGATAAGTCAGTTGTGGATAAAGAAAGGGAAAGCTGGTTAATTGACCAGTGGGTTTGTCTAACAGAAGAACGTAACGCTGTTCTTTGTCCTTTACCGGGTAGTGGAATACCGGGTTCACCGCCCCTTGAAGAAAACATTCAGTCAGGTCTGGAAGCACACATTCCTGTCATATTTCTTGACCTCAATGATGATTTTCGAAACGTCGGGGCCGAGGACGTGGGTCCCGCGGGAATTGACTCCACCTTATCGTTTGAAAACCCTGACAACATGATAAACCTGCCAATCATTAAGTATGACCAGAAACAAGTATCGGCGACTGCGTCGTGGGACTCATCCAGTCACGATGCTATTGAACTGACTCGAGTTACAGGCTCTAATGAAAGGGTGTATCTCATCGTGAAGGTTGTTGTTGGACTAACCAGTCCTGTCACCATGGAACTAGTGCTACGTAAGAGGATTTGTGTTCGAATTTACAAAAGGCAAAGTTGGAAAGACAGTTTATTAAGAAGATTATCAAAGGATTTACGATATAGCTGTGGAGTAGTCTACGAACTTCAACCTGGAGAAGAGACGGAGGAGCGGGCAAGTCTCGCACAAATGGCTGCTCAAGCAGTAGGCGAAGAGGAAGAAGACGAAACAGTACTAAAACGATATAGCAGGGGAATATCTAATGTTGAGAGTTTGTTAGCGTTGGACAAACTAAGACAGGAAGTTGTGGTGAAAGAAAAACTTGCTGCTATTGGCAAACCTTTGAGAAAGTTTGCAAGTACACCCAATCTTGCAATGGCGTCTGACTTCTCCTTTGTAAGCAGCAGCCCTGGTCGCTTCGACTCTCCCGAGTCTAGTCGTTTCTTAGATTTTAAAAGTTATGGTTTAAATTCCGACTCTCGACCGAGCCGAAGTTTCACCGGACGAGAAGAGGCATTGATTGATTTACAATCGTACGTGTCGCCTCTCAGTCAAACTAGCACTCCATCAAGTTCAGGAGTTATAATGCGTAACTCAAGTGGCAGACAGCAAAATCCTCGCCCTAGCTCCCTCGTTATTGATTTAGAAACCCTTAATGAAGATTCCAAGGACCCTAGTCCTGAGGTGCACATACCGGGTCTTTTTGACTTTGCTGGTATTAAACTAGAAGTACCCGAAACCTGCACGAGCCCTCTGCCGGACGATCTTCGAGAAAGGACGGCAAGCTCGGATACGATTATTTTTGACGAAGATGCCGCGTTGGTTTACGACGACCTTCCGACGCCGGTGCCGTTTCAGTTTATGAAAGAAAAAGTTACGGATAGTTCCGGAAATGGGCTTAAAACTCAGGAAAAAACACCACAGGAAGCAACACCACAGGATAAAACTCCGGAGAACGACATCTCACTTACGACGAATTCAGAATTGCTTGATATGTTATCAAATGAGAAAATAGAAGCCGAGTCTTGGCCTAAGGCGAATGAGATTTCAACAAATGAAAGTCTACTTCTTGACTTCGGTAATTCAACTGTGGAATCAGAGAAAGGCGATGATATTTCTAAGAATGACTTTACAAATGATTTAATGTCACTAGATAATCCAGTGAATCAGACATTAGAGACATTTGCGCTTACTAATCCATTAGGCGGAGGTCTGGACGATCTCTCGACGACATCTCCACTACCGGACATTCTTACTCCCTCGAAATCCGAGACTGAACCGAATGATTTCGGACAGAACTCGGAGGAGGAGAAGAACTTCCTTTCGACCTCTCGTGACGATCTCTCTTCGTTAGGAAGCAGAGAAGACTTGGCATCGTCTTTAGACAGTTTGGAATGGAATGAATCTTGTCTTGGAAACTTAAAGCCGGGAATGGCCGTTTCGTTGGGCGAGGGAAAGACCGGAGTCATACGATTTACGGGAGCCACGGAGTTTTCCCCCGGGATGTGGGTCGGCGTAGAACTCGACAAACCTGGAGGACGAAATGACGGCTCCATTCAGGGTGTACGCTACTTCGCCTGCAAACCAAGATTTGGTTCGTTCGTTCGTCCCGACAAAATCACCCCCATCGAACACAGCCAACGAGAAAGGAGCACATCGCGTAGAATCACTGGATCACGTGATATGGCCAAAACATCATCCAATAGAGCACTAAATAAAACTGACAGCTCGTCACGGACATCACTTGTAAAGACTACCACTCGAAGACGAACGGACAGTCCTAGTGCCGGAGGTAGATCAGACAGTCCCTCGGGTGCATCCCGTGCCGGTGCGGGACGAGGGGACAATTCTCCCGTCATAAAACGTGACAATGCGGGCTCAAATCGTAAAAAGGACGACTGGAAACGACGGTCGAATATTTTATTTTAA

Transcript

gene24394.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EQW7	Kinesin-like protein KIF13A OS=Mus musculus OX=10090 GN=Kif13a PE=1 SV=1
Q9H1H9	Kinesin-like protein KIF13A OS=Homo sapiens OX=9606 GN=KIF13A PE=1 SV=2
Q9NQT8	Kinesin-like protein KIF13B OS=Homo sapiens OX=9606 GN=KIF13B PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001329 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan
PF12423 all species →	KIF1B	Kinesin protein 1B	Family	Interproscan
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan
PF16183 all species →	Kinesin_assoc	Kinesin-associated	Family	Interproscan
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF12473 all species →	DUF3694	Kinesin protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR022140 all species →	Domain	Kinesin-like KIF1-type	Interproscan
IPR032405 all species →	Domain	Kinesin-associated	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR022164 all species →	Domain	Kinesin-like	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47117 all species →	STAR-RELATED LIPID TRANSFER PROTEIN 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17914	KIF13; kinesin family member 13	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.