Detailed information of gene24461.t1 in Actinoscyphia liui

Genomic Location: chr7:12325409...12329181
NR annotation: XP_020892003.1, cholesterol 24-hydroxylase [Exaiptasia diaphana]
Species Actinoscyphia liui · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q27589Cytochrome P450 4d2 OS=Drosophila melanogaster OX=7227 GN=Cyp4d2 PE=2 SV=2
Q9W011Probable cytochrome P450 4d20 OS=Drosophila melanogaster OX=7227 GN=Cyp4d20 PE=3 SV=1
Q9VLZ7Probable cytochrome P450 4d21 OS=Drosophila melanogaster OX=7227 GN=Cyp4d21 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000513 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00067
all species →		p450Cytochrome P450DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039983
all species →		FamilyCholesterol 24-hydroxylaseInterproscan
IPR036396
all species →		Homologous_superfamilyCytochrome P450 superfamilyInterproscan
IPR001128
all species →		FamilyCytochrome P450Interproscan
IPR002401
all species →		FamilyCytochrome P450, E-class, group IInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24293
all species →		CYTOCHROME P450 FAMILY 46 SUBFAMILY AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005506
all species →		Molecular Functioniron ion bindingInterproscan
GO:0006707
all species →		Biological Processcholesterol catabolic processInterproscan
GO:0020037
all species →		Molecular Functionheme bindingInterproscan
GO:0033781
all species →		Molecular Functioncholesterol 24-hydroxylase activityInterproscan
GO:0004497
all species →		Molecular Functionmonooxygenase activityInterproscan
GO:0016705
all species →		Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygenInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gene24461.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Actinoscyphia liui tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Actinoscyphia liui, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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