Gene detail

Detailed information of gene24908.t1 in Actinoscyphia liui

Genomic Location: chr7:18563693...18567342
NR annotation: XP_031549107.1, uncharacterized protein LOC116286682 [Actinia tenebrosa]
Species Actinoscyphia liui · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene24908.t1

GTTTCATTGACCATGAGTTTTCTCAACCTTCTCTTCGTTTGGGCAGCCTTACAATCATTCGTTTCAGTAACCGGGGTTAAATGGACTAAGCCTATGAAACCTAGAGTCTACAAGCGCGTCATAAAACAAGGCTTCTCCACCAACTACTTCAAAGCTACCCCACCACTCAAAAAATACCGCGACCAAAACATCCAGGACGTCTATGACAAAGGCTTTAGAAATCTCAGGCTTCGCTGTAGTGCAGACCTAGACGTATACAAGCCACCTTACACTGATGAAGTTTTCATTAGCTTTCTGACAAACCTGACATCAGTGGTTGATGAATGTTTGAAGGTTGGTGTGGTTCCAATCATCTCTTGGATTCATCACCACGCCGAGGCGTATGCCACTGAAGACGATCATCAGAATTACTTGTCTTGGTGGAAAGTAGTGGCCGATCACCTAAAGGACAGAGACTACAGGCTCAGTTTTAACTTATTTACTGAGTTAGGAAAGGATACGTGTAAAAACAACTGTGGCCAGAGCCTTCGTGAGAACACAGCAAAGTACAATCAGTGGACATCAGACGTGATCAAAGCAATCCGTGCCACCGGTGGCAAGAATGAAAAGCGCATCTTAATTCTAGCCTCGCCCAAGAAAACAGCTAAAGGTCTTGGTTATATTGACACGTCCATCCTACAGAGCGACAATTATCTTATGGCAGAGTGGCACTTGTACGCCTCTGGACCGACTAATGATTCAAAAAGTCAAAAGTACTGGAGTGGCAATGGCAAAGATGGAGGAAAGGAAAATGTCGGAAACGCGATCCAACCAGCTTTAGATTTCACCGCCAAAACAGGGGTCCCAACCTACTTTGGTGCATGGATGGCCCACGACCAGATATATGGCGGGCTCAACCAATACGAGGTCATTCAGTTTTCAAAGTATTTTGTTGCGCAGGTAAAGAAAGCAGGCATCCCTTGGTCTCTAAATGTGCTTGATCGCTACTATGACACCAAAGAAGCAAGATGGATAGATGAAAAACAAACTCTCAAAGGCCAAGACCTCTACATGGATAAGGTTTTGAACGCTATTATAAAGAAGATGTAAGGCTTTCAAGCCGCAGGGAGCCCGACTTGATAATTCCTTGAGATTAATACATAGGCATTCAATAAATAATTAATTATAGATCATACATGGGCATTATATAAATAATTAATTAATGTTTGGCATTAAGCACACTGCTAGAGTACGTACACAAACCAAGCTGCACAGAAAAAGACAACCAGTCTGTTACTTAAAATTATTCATTAATAAATGAACCGGGCTCCCTGTGCTTAAAGAAATTAACAGGTTAGCATTATTTAATCGGGATTAAACTATAACAACAAAATACTTAAAATAATTGACTCTTTGGAGAATCTCCGTGATTCATGAAAAAGAGAGACGGAACTAAATAATAATATCCTTTAATATTCTTTGTAAAACATGTCCACGAACCATGGTTCGTGATACATAGAACCATTAAAGAGAGGGAACTAAATATTATGATATATTTTTGGATTCTTTATAAAACTTGCAGTTATTAAATAACTGTAGTAATTAATTCATTACAGTGAGTGCCAGGCAGACACCCCTCTAGGGCGGATATCCCTCTGACTTATCCCAATCGAATTCTAAAACCCTCTCTAAGTTAATTAGACACACCTCTCTAGGGTGGACATCCCTCTGACTTGTCCCAATCGAATTCTAAAACCCTCTCTAAGTTAGACACACCTCTCTAGGGCGGACATCCCTCTGACTTGTCCCAATCGAATTCTAAAACCCTCTCTAAGTTAATTAGACACACCTCTCTAGGGAGGACATCCCTCTGACTTGTCCCAATCGAATTCTAAAACCCTCTCTAAGTTAGACACACCTCTCTAGGGCGGACATCCTTCTGACTTGTCCCAATCGAATTCTAAAACCCTCTCTAAGTTAGACACACCTTTCTAGGGCGGATATCCCTCTGACTTGTCCCAATCGAATTCTAAAACCCTCTCTAAGTTAGGCACACCTCTCTAGGGCGAACATCCTTCTGACTTGTCCCAATCGAATTCTAAAACCCTCTCTAAGTTAGACAAACCTCTCTAGGGCGGACATCCCCAATCGAATTCTAAAACCTCTAAGTTAGACACACCTCTCTAGGGCGGACATCCCTCTGACTTGTCCCAATGGAATTGCACGAAATCTTCAGTACTTAAACCCTCTCTAAGACTGTAAGAGCTGAACCCAGTTATGACTGCCATAGAAGGGCTATACAGCTGTTACAATCTGACAATATGGGTTAAATTCATGTCTCTTGTGATACATGTCGTAGTTTCATTGGTGTAAAATAAGCAGTGTTCTAGCAATAGCTTTTCAACTGGGGCTGCTAAAATCACGCCAATCAACGATCCAAATTCCATTCCAAAAATAGCCAACCCCATGGCAAACTCCCTCTTTCTCTGATCTTTCATTTCACCAAACTTCACACTTAAGTTAGCAAAAGCTGCCTCGGCGAATATCCCTAAGGTGAACACCAACACGAGGACGCACCACACATTGGGTAAAAACCTATATAGAGAAGCAAGAACGAACATAATCACGTGCCAAGCTGATATCACCACTAGCAACCACGTTTGACGTATAAGACACTTGTCTGAGAGACCAGGCCTTATGTAGTCTGCCAGCCCAAGGTACGAACGTCCAATAAAGAGTCCAGTGAAGGAGATGATCAAGTAGTACTTATAATCGTCTGTTGGCGAGAATGGTGAATTGGAAAATGCTATAGTAGTTGTAACGCCACTAAGCACAAAATCATGGAACGCAATTCCAAGGAATATTTGAAAAATATCTGGAAAGATATGACACGCAGTTGAAAGTTTGTCCGAAAATGTAAGATGCTCATGAAGGTCTGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10477	Cellulase/esterase CelE OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=celE PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002403 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00150 all species →	Cellulase	Cellulase (glycosyl hydrolase family 5)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050386 all species →	Family	Glycosyl Hydrolase 5 (Cellulase A)	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR001547 all species →	Domain	Glycoside hydrolase, family 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31297 all species →	GLUCAN ENDO-1,6-BETA-GLUCOSIDASE B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0006073 all species →	Biological Process	obsolete cellular glucan metabolic process	Interproscan
GO:0008422 all species →	Molecular Function	beta-glucosidase activity	Interproscan
GO:0009251 all species →	Biological Process	glucan catabolic process	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0071704 all species →	Biological Process	obsolete organic substance metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01183	E3.2.1.14; chitinase	EC:3.2.1.14	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.