Gene detail

Detailed information of gene24922.t1 in Actinoscyphia liui

Genomic Location: chr7:18729661...18737029
NR annotation: XP_020907134.1, ubiquitin-conjugating enzyme E2 N [Exaiptasia diaphana]
Species abbreviation ALIUI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gene24922.t1

GGTTTTCCTTCTTTGAACCGTTTAAAACGTCATTAAAACTACAGAAATTTAGAAAATGAGTACGGGATTACCTAGAAGGATCACTAAGGAGACTCATCGACTTATGAGCGAACCGGTCGATGGAATTACTGCTACACCAGACGAACACAATGCCAGATACTTCCACGTTGTTGTCAATGGCCCAAAAGATACCCCTTTTGAAGGAGGAAGGTTTAATCTGGAGTTATTTCTTCCTGAAGAGTATCCAATGGCAGCACCGAAAGTACGGTTTATGACAAAAATTTACCACCCAAATGTCGACAAACTGGGAAGAATTTGTTTGGATATATTGAAAGATAAATGGAGCCCTGCCCTCCAGATCCGCACTGTTCTTCTTTCAATACAAGCTCTACTTAGTGCTCCTAATCCAGATGACCCATTAGCTAATGACGTAGCTGAAAAGTGGAAAATTAATGAAGTTGAAGCAATTGAAACTGCTAAGTTATGGACAGCAAAATATGCCAAGAAAACTGCTGACTAGATTAGACTTCTGTTCTCGTCGATCTTTAAATGCAACGAACCATATTAAGTTTTCTATTCATGAGCTGTGAAAATTCATATCATCAGCACTGAAAGACAATTTATAGAACTAAAACTGTGAAAAAACTGTAACTGCAATATAAACCAATGCTGCACAGAGAAAAAATTATAAAATCCATGAATGCTAAAATCATATTCCCATTTTGAATCAATACGAATAGTTTGTTTTCCCCATTAATTCCAAAACCATTAATGGGAATAGTTTGTTTTTCTGATTGCTTCAAAACAATTCATGGATTTTATTTAAAATAATTCCCTGTGCTTAAAGGCAATATTGCAAGTTGCAATGACATACTGGTAATGCTACAGGGGCCTATCCAGGATTTCTGAATGGGGTTAGGATGGGTACAGAGACATGTCCCCATACAAGGTTGCAATGTTCCAGTTTGTTGTCTTTAAAGGAAAACGTTTACTATTAGACATGTTACATTGTATTTAGGAACTTGTCAGAAATTAGCAAGGGGGAGGGGGGTGTATATTTTAAATTGAGCATTGAAAATGATGTGACCCTCCCTAGCAATGGGAATGGAATTTCCTGACCCTCCCCTTGGGCTTGGCCTAAAATACCAAAATACTCCCTTTTTCACTGCCTATTTTTTCATGACCCTCCCTTTTCAGGGGCTCAAAAAGTTATGACCCTCCCCCATTTTCCACCCTCCCTCCCCCCTGCTAATTTCTGACAAGTCTCTTATTGCAGTCAAAATGGGGAGTAGCAAGCCACCCAATCCCCACCCCTCACCCCTGGATCTGCCCTTGTGGAAGGACAGGCCACATAACCCAATAATTGTTATGAGAGAAATTAGTTCTCTCATGTGATATAGCAAATATGATGTTTGGATGGGCCAGGCCCACAAGAAGTGGATAGCACTATCCTGATCCAGTGAATAAAATGATGCCCTTATCCAAATCTATCCACTGGATAAGGATTTATTCAACAGATAGCACTAACCACTCTTTATATACCCAGTTTCATGGGGATAAATCGGCACTTATTTTTTGCCCATCTTGTGTACTGCTCATGTGACCTGTTTCCAGGACATATGCCTTGAATGTGCACAAGGTGTGGCTTGCTGTGACCTACCCCTGTAATCTGTTGCCTGAGGTCACTTCGACTGTATTTCACAAGTGTAGCTATTGTTTTAGCTGCCAAGAACAACAGCTACACTTGTAAATAATATTACAAGTGTAAAAGTTTTATTGAAGTGACCCCTGGTGTGTTGAGACCTCGATAGTTCTAAGGGGTGATGAATGGTAAAAGTGAGACTTTGCGACAGTGAAAGACAGGTGTTTAAAAATGTGAGCTCAACACTTGAACTTATGAAAAATCATTATTTCAGAAATTTGAGACTGCAAGACACACCCAGAAAAAATTGACACTTTTAAGACCGTTAAATTTTGTAAAACTGAGTATTTCTCGGCACCATTCAACACCCCTATAGAACATCTAATGCGCAAAAACCAACAACAACAACAAGTATCTACACTTTCATATGATGCGACTATCGTACATTTTGCTCTGTTTAAAAGCCGTATTGAAGGAAATACATCTTTTAAAGCAATGGAAAACTTTGGAAAACAGTAGAATCCCACTATTTGTCGAACTCCCAAGGGAAGCCAAAAAAGGTTCAAAATAGTGCAGCTCCTTCGATCGTGTACCACAAGCACAGTTTAATGTAATTCAATAGTAACAAAAGCTTACAACAAAAGACTCCAAGTTATACAATAAAACAAAGCTAACTAAAAATACAATAGGTTTGTGGTACACAACAGAGGACTTCAAATAGTGTATGTTCAATAGAGGGATTTTACAGCAGCCATCTGTGGGCAGAAACAATTGAATATTTTTGAATGACAAAACATTTCATTTCTCTTGGGAACACAAGGTTTATTATATTGGACATAAAGATAGCTGCCGTGAAATCCCTTTATATAAGATTGCAGTGTTTTTAAGATAAGGGAGTTTCAAATAGCAGGGTTATACTGCAACTTTAAAGCAAGTCTATCTGTGAAAGTACAAAGTAAACACAATTGAAAGGGGTCCCTGCAAGAATAACGTAAGTGACCTCTGATCAAATTGTAAATTCTCCCTCAAATCCCTTCAATTCCAAAGGAGAAGTTGGTTTTTGATCAGAGATCACTTACGCTGTTTTTGCAGGGACCCCTTTAATTGAAAGTACGGTGTCAACTGTGTGCTAGGCTAAATTAGAAGTACAGGGCTGAGTTCCCGGAAGGACGATTAGCACTAATCCCGGATTAAACCTTAAGAAAACCATTCATGTTAACCCTGGATTAAACCTTAAGAAAACCATTCATGTTAACCCTGGATTAAGGCTAATCAGCCTTCTAGGAACTGGGCCCAGTATGAGTATTTGGGACATTTTGATTGTAAGCATCTCAAAGACTTCCATATCTGCTTGTCATATTTGTAAACTCTAGTTCATGTAAAGTCATAGATTTAAGTCATTTTAGTGTCACTGTTGAATACAATCAACTCTGGTTATAGCCCACACCCACAGGGCTGTAATTGATGTCGGTGACAGCAAGAGTACCCAATAGAGTCATTTTTGTATGAGTGGAAAGTAGTATACCATGCCATGATGGTACCATATCTGAGCATTCTGATTGGATGAGCAGTGATTTTGGGCATTGTGATTGGTTGAATAGAAGGAGTACTGTTCACCGTGGCAAAAATGACTCTATTATAGGCTTATTTTGAGTACAGTTTTTGTAACTTTCACCAAAGCTGGCACTAGCTGTTGTTCCAGCCAAGAGGTACCCTTTGCAAGCCACTTTTCATGTGTTAACTATAAAATAATTGATACCTTCCAGGTTCTTGTAAGAAACATCAGAAGTACAGTAGTTCAATTATTATTATTATTAATCCAAATGATGTGTATTTACTATCAGCATATGCATTCAAGTAATTGGTTTTAACTGAAAATGAGCTTATTAGGAAATATATTGTTATACAATGCCTTAGTCTCTCTCTTCTTTAGTTGGTTATTCCTTATTTTTCCCCATTCACACCTACAACTAAACGTGTGTTGAATTTTTTTTGTTGAATTTTGTGTTTAGCTGCATACAGTTACAAAATAATGTACATTTACATTCTACCTAACACAGGTTGTTCAGTTAAACGAGGTTTAGAGCCAGCTAGTATGCAGCGTGATTGAATCGAATATTAAACTGGTTTAGTTAAACAACTTTTAAACATGTTTAGTTGCAGGTGTGAATGGGGTAGAAGGAAAAGGGGGAGGGTACAATGGTTTTCTAAGGAGCATGGCTAAAGCAGAGGGAGGAGGGGATGATCTGGGAAAATTGAATCCACATTAAAACAATTTTTTATTAGTCCACCCCTTGTTCAAATACAAGGCAAAAATTCTGACTGGCGCAACCCCTTTTCATGCATAAAAGTGGTAGCCATGCCCCTATTTTTGCCAGACCAGCCCCACCTTTACACTATGACCAGTACCTACTTTTTGCCTTGCCTTTTCCTCTAGTCCAAGGGCGCTGTCCATTAATTCGAACCGACCTGTCCGAGCAGCCAGTTCTCAAATGGTACGTGTTACTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P5K3	Ubiquitin-conjugating enzyme E2 N OS=Bos taurus OX=9913 GN=UBE2N PE=2 SV=1
P61088	Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens OX=9606 GN=UBE2N PE=1 SV=1
P61089	Ubiquitin-conjugating enzyme E2 N OS=Mus musculus OX=10090 GN=Ube2n PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008277 (this species only)
Ubiquitin family	E2\|UBC\|UBC · all ubiquitin genes in this species
Ubiquitin family	UBD\|UBC-like\|UBC · all ubiquitin genes in this species
Ubiquitin family	E2\|UEV\|UEV · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00179 all species →	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000608 all species →	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR050113 all species →	Family	Ubiquitin-conjugating enzyme	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR023313 all species →	Active_site	Ubiquitin-conjugating enzyme, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24067 all species →	UBIQUITIN-CONJUGATING ENZYME E2	Interproscan

Gene Ontology

No Gene Ontology signature was detected for gene24922.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10580	UBE2N, BLU, UBC13; ubiquitin-conjugating enzyme E2 N	EC:2.3.2.23	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.